Analysis of interatomic Contacts of Structural Units in PDB entry:
9JBZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9JBZ entry

There is 1 chain in PDB entry 9JBZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 118GLY 1196
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 39 helices in PDB entry 9JBZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
118 130Right-handed alpha
Helix 2
AA2
A
194 198Right-handed 310
Helix 3
AA3
A
201 206Right-handed alpha
Helix 4
AA4
A
211 223Right-handed alpha
Helix 5
AA5
A
233 243Right-handed alpha
Helix 6
AA6
A
244 260Right-handed alpha
Helix 7
AA7
A
262 295Right-handed alpha
Helix 8
AA8
A
378 382Right-handed alpha
Helix 9
AA9
A
417 420Right-handed 310
Helix 10
AB1
A
421 432Right-handed alpha
Helix 11
AB2
A
441 468Right-handed alpha
Helix 12
AB3
A
473 489Right-handed alpha
Helix 13
AB4
A
492 510Right-handed alpha
Helix 14
AB5
A
517 525Right-handed 310
Helix 15
AB6
A
533 538Right-handed alpha
Helix 16
AB7
A
564 574Right-handed alpha
Helix 17
AB8
A
588 599Right-handed alpha
Helix 18
AB9
A
656 663Right-handed alpha
Helix 19
AC1
A
670 681Right-handed alpha
Helix 20
AC2
A
697 704Right-handed alpha
Helix 21
AC3
A
705 711Right-handed 310
Helix 22
AC4
A
728 738Right-handed alpha
Helix 23
AC5
A
750 761Right-handed alpha
Helix 24
AC6
A
800 807Right-handed alpha
Helix 25
AC7
A
813 823Right-handed alpha
Helix 26
AC8
A
823 831Right-handed alpha
Helix 27
AC9
A
832 834Right-handed 310
Helix 28
AD1
A
841 855Right-handed alpha
Helix 29
AD2
A
865 867Right-handed 310
Helix 30
AD3
A
868 875Right-handed alpha
Helix 31
AD4
A
952 956Right-handed 310
Helix 32
AD5
A
967 1009Right-handed alpha
Helix 33
AD6
A
1013 1033Right-handed alpha
Helix 34
AD7
A
1051 1078Right-handed alpha
Helix 35
AD8
A
1097 1118Right-handed alpha
Helix 36
AD9
A
1127 1130Right-handed 310
Helix 37
AE1
A
1131 1151Right-handed alpha
Helix 38
AE2
A
1153 1160Right-handed alpha
Helix 39
AE3
A
1166 1195Right-handed alpha
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There are 8 sheets in PDB entry 9JBZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
142 143first strand
Strand 2
A
155 156anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
171 174first strand
Strand 2
A
177 181anti-parallel
Strand 3
A
189 191anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
308 313first strand
Strand 2
A
300 305anti-parallel
Strand 3
A
322 325anti-parallel
Strand 4
A
410 414anti-parallel
Strand 5
A
338 339anti-parallel
Strand 6
A
383 384anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
359 361first strand
Strand 2
A
344 348anti-parallel
Strand 3
A
389 394anti-parallel
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There are 11 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
513 515first strand
Strand 2
A
960 962anti-parallel
Strand 3
A
877 880parallel
Strand 4
A
858 863parallel
Strand 5
A
527 532parallel
Strand 6
A
742 746parallel
Strand 7
A
836 838parallel
Strand 8
A
808 812parallel
Strand 9
A
769 772parallel
Strand 10
A
783 786anti-parallel
Strand 11
A
792 794anti-parallel
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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
544 547first strand
Strand 2
A
713 722anti-parallel
Strand 3
A
684 690anti-parallel
Strand 4
A
647 655anti-parallel
Strand 5
A
632 640anti-parallel
Strand 6
A
618 627anti-parallel
Strand 7
A
607 609anti-parallel
Strand 8
A
601 602anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
544 547first strand
Strand 2
A
713 722anti-parallel
Strand 3
A
664 666parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
578 579first strand
Strand 2
A
585 586anti-parallel
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