Analysis of interatomic Contacts of Structural Units in PDB entry:
9JC1

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9JC1 entry

There are 14 chains in PDB entry 9JC1 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
D	MET 1	MET 469
E	MET 1	VAL 471
F	THR 2	VAL 471
G	ALA 2	GLN 285
H	ILE 4	ARG 84
I	ALA 6	SER 579
J	ALA 6	SER 579
K	ALA 6	SER 579
A	ILE 80	UNK 616
B	LYS 85	VAL 163
C	ILE 80	UNK 616
L	LYS 85	VAL 163
M	ILE 80	UNK 616
N	LYS 85	VAL 163

There are141 helices in PDB entry 9JC1. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	D	88	92	Right-handed 310
Helix 2	AA2	D	124	128	Right-handed 310
Helix 3	AA3	D	139	146	Right-handed alpha
Helix 4	AA4	D	163	179	Right-handed alpha
Helix 5	AA5	D	191	206	Right-handed alpha
Helix 6	AA6	D	207	209	Right-handed 310
Helix 7	AA7	D	221	227	Right-handed alpha
Helix 8	AA8	D	228	242	Right-handed alpha
Helix 9	AA9	D	253	268	Right-handed alpha
Helix 10	AB1	D	273	277	Right-handed 310
Helix 11	AB2	D	280	290	Right-handed alpha
Helix 12	AB3	D	308	312	Right-handed 310
Helix 13	AB4	D	315	322	Right-handed alpha
Helix 14	AB5	D	332	338	Right-handed alpha
Helix 15	AB6	D	355	360	Right-handed alpha
Helix 16	AB7	D	361	380	Right-handed alpha
Helix 17	AB8	D	380	385	Right-handed alpha
Helix 18	AB9	D	394	410	Right-handed alpha
Helix 19	AC1	D	417	422	Right-handed alpha
Helix 20	AC2	D	429	443	Right-handed alpha
Helix 21	AC3	D	449	453	Right-handed 310
Helix 22	AC4	D	458	469	Right-handed alpha
Helix 23	AC5	E	139	146	Right-handed alpha
Helix 24	AC6	E	163	180	Right-handed alpha
Helix 25	AC7	E	191	206	Right-handed alpha
Helix 26	AC8	E	221	227	Right-handed alpha
Helix 27	AC9	E	228	244	Right-handed alpha
Helix 28	AD1	E	254	269	Right-handed alpha
Helix 29	AD2	E	273	277	Right-handed 310
Helix 30	AD3	E	280	290	Right-handed alpha
Helix 31	AD4	E	309	312	Right-handed 310
Helix 32	AD5	E	315	322	Right-handed alpha
Helix 33	AD6	E	323	325	Right-handed 310
Helix 34	AD7	E	332	338	Right-handed alpha
Helix 35	AD8	E	355	360	Right-handed alpha
Helix 36	AD9	E	361	380	Right-handed alpha
Helix 37	AE1	E	380	387	Right-handed alpha
Helix 38	AE2	E	388	392	Right-handed 310
Helix 39	AE3	E	393	410	Right-handed alpha
Helix 40	AE4	E	429	442	Right-handed alpha
Helix 41	AE5	E	449	454	Right-handed 310
Helix 42	AE6	E	458	469	Right-handed alpha
Helix 43	AE7	F	88	92	Right-handed 310
Helix 44	AE8	F	124	128	Right-handed 310
Helix 45	AE9	F	139	146	Right-handed alpha
Helix 46	AF1	F	163	180	Right-handed alpha
Helix 47	AF2	F	191	206	Right-handed alpha
Helix 48	AF3	F	207	209	Right-handed 310
Helix 49	AF4	F	221	226	Right-handed alpha
Helix 50	AF5	F	228	243	Right-handed alpha
Helix 51	AF6	F	253	266	Right-handed alpha
Helix 52	AF7	F	267	269	Right-handed 310
Helix 53	AF8	F	273	277	Right-handed 310
Helix 54	AF9	F	281	290	Right-handed alpha
Helix 55	AG1	F	308	312	Right-handed 310
Helix 56	AG2	F	315	322	Right-handed alpha
Helix 57	AG3	F	323	325	Right-handed 310
Helix 58	AG4	F	332	338	Right-handed alpha
Helix 59	AG5	F	360	384	Right-handed alpha
Helix 60	AG6	F	396	408	Right-handed alpha
Helix 61	AG7	F	429	442	Right-handed alpha
Helix 62	AG8	F	449	453	Right-handed 310
Helix 63	AG9	F	458	469	Right-handed alpha
Helix 64	AH1	G	3	57	Right-handed alpha
Helix 65	AH2	G	90	107	Right-handed alpha
Helix 66	AH3	G	119	129	Right-handed alpha
Helix 67	AH4	G	145	162	Right-handed alpha
Helix 68	AH5	G	208	282	Right-handed alpha
Helix 69	AH6	I	15	31	Right-handed alpha
Helix 70	AH7	I	64	72	Right-handed alpha
Helix 71	AH8	I	87	94	Right-handed alpha
Helix 72	AH9	I	178	182	Right-handed 310
Helix 73	AI1	I	213	217	Right-handed 310
Helix 74	AI2	I	228	235	Right-handed alpha
Helix 75	AI3	I	252	264	Right-handed alpha
Helix 76	AI4	I	279	293	Right-handed alpha
Helix 77	AI5	I	309	329	Right-handed alpha
Helix 78	AI6	I	340	355	Right-handed alpha
Helix 79	AI7	I	360	364	Right-handed 310
Helix 80	AI8	I	368	377	Right-handed alpha
Helix 81	AI9	I	406	414	Right-handed alpha
Helix 82	AJ1	I	423	430	Right-handed alpha
Helix 83	AJ2	I	444	449	Right-handed 310
Helix 84	AJ3	I	450	471	Right-handed alpha
Helix 85	AJ4	I	484	498	Right-handed alpha
Helix 86	AJ5	I	507	520	Right-handed alpha
Helix 87	AJ6	I	527	529	Right-handed 310
Helix 88	AJ7	I	530	546	Right-handed alpha
Helix 89	AJ8	I	548	557	Right-handed alpha
Helix 90	AJ9	I	561	576	Right-handed alpha
Helix 91	AK1	J	15	31	Right-handed alpha
Helix 92	AK2	J	61	71	Right-handed alpha
Helix 93	AK3	J	92	97	Right-handed alpha
Helix 94	AK4	J	178	182	Right-handed 310
Helix 95	AK5	J	213	217	Right-handed 310
Helix 96	AK6	J	228	235	Right-handed alpha
Helix 97	AK7	J	252	264	Right-handed alpha
Helix 98	AK8	J	279	293	Right-handed alpha
Helix 99	AK9	J	309	329	Right-handed alpha
Helix 100	AL1	J	340	355	Right-handed alpha
Helix 101	AL2	J	360	364	Right-handed 310
Helix 102	AL3	J	367	377	Right-handed alpha
Helix 103	AL4	J	406	414	Right-handed alpha
Helix 104	AL5	J	450	474	Right-handed alpha
Helix 105	AL6	J	480	486	Right-handed alpha
Helix 106	AL7	J	488	498	Right-handed alpha
Helix 107	AL8	J	507	521	Right-handed alpha
Helix 108	AL9	J	530	546	Right-handed alpha
Helix 109	AM1	J	546	557	Right-handed alpha
Helix 110	AM2	J	561	576	Right-handed alpha
Helix 111	AM3	K	15	31	Right-handed alpha
Helix 112	AM4	K	64	72	Right-handed alpha
Helix 113	AM5	K	87	92	Right-handed alpha
Helix 114	AM6	K	178	182	Right-handed 310
Helix 115	AM7	K	228	235	Right-handed alpha
Helix 116	AM8	K	252	263	Right-handed alpha
Helix 117	AM9	K	279	293	Right-handed alpha
Helix 118	AN1	K	309	329	Right-handed alpha
Helix 119	AN2	K	341	355	Right-handed alpha
Helix 120	AN3	K	360	364	Right-handed 310
Helix 121	AN4	K	367	377	Right-handed alpha
Helix 122	AN5	K	406	414	Right-handed alpha
Helix 123	AN6	K	450	472	Right-handed alpha
Helix 124	AN7	K	481	499	Right-handed alpha
Helix 125	AN8	K	507	520	Right-handed alpha
Helix 126	AN9	K	527	529	Right-handed 310
Helix 127	AO1	K	530	545	Right-handed alpha
Helix 128	AO2	K	546	557	Right-handed alpha
Helix 129	AO3	K	561	575	Right-handed alpha
Helix 130	AO4	A	81	140	Right-handed alpha
Helix 131	AO5	A	601	616	Right-handed alpha
Helix 132	AO6	B	86	143	Right-handed alpha
Helix 133	AO7	B	145	163	Right-handed alpha
Helix 134	AO8	C	81	140	Right-handed alpha
Helix 135	AO9	C	601	616	Right-handed alpha
Helix 136	AP1	L	86	143	Right-handed alpha
Helix 137	AP2	L	145	163	Right-handed alpha
Helix 138	AP3	M	81	140	Right-handed alpha
Helix 139	AP4	M	601	616	Right-handed alpha
Helix 140	AP5	N	86	143	Right-handed alpha
Helix 141	AP6	N	145	163	Right-handed alpha

There are 26 sheets in PDB entry 9JC1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	3	10	first strand
Strand 2	D	13	17	anti-parallel
Strand 3	D	58	63	anti-parallel
Strand 4	D	44	53	anti-parallel
Strand 5	D	29	34	anti-parallel
Strand 6	D	75	78	anti-parallel
Strand 7	D	3	10	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	84	86	first strand
Strand 2	D	115	117	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	95	96	first strand
Strand 2	D	211	217	parallel
Strand 3	D	183	190	parallel
Strand 4	D	246	251	parallel
Strand 5	D	299	305	parallel
Strand 6	D	153	157	parallel
Strand 7	D	327	330	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	134	135	first strand
Strand 2	D	148	149	anti-parallel

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There are 14 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	77	78	first strand
Strand 2	E	29	34	anti-parallel
Strand 3	E	44	53	anti-parallel
Strand 4	E	58	63	anti-parallel
Strand 5	E	13	17	anti-parallel
Strand 6	E	5	10	anti-parallel
Strand 7	J	138	145	anti-parallel
Strand 8	J	129	133	anti-parallel
Strand 9	J	165	172	anti-parallel
Strand 10	J	103	113	anti-parallel
Strand 11	J	56	58	anti-parallel
Strand 12	J	50	53	anti-parallel
Strand 13	J	7	9	anti-parallel
Strand 14	J	38	39	parallel

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There are 14 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	77	78	first strand
Strand 2	E	29	34	anti-parallel
Strand 3	E	44	53	anti-parallel
Strand 4	E	58	63	anti-parallel
Strand 5	E	13	17	anti-parallel
Strand 6	E	5	10	anti-parallel
Strand 7	J	138	145	anti-parallel
Strand 8	J	148	154	anti-parallel
Strand 9	J	116	119	anti-parallel
Strand 10	J	103	113	anti-parallel
Strand 11	J	56	58	anti-parallel
Strand 12	J	50	53	anti-parallel
Strand 13	J	7	9	anti-parallel
Strand 14	J	38	39	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	84	86	first strand
Strand 2	E	115	117	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	95	96	first strand
Strand 2	E	211	216	parallel
Strand 3	E	182	188	parallel
Strand 4	E	246	251	parallel
Strand 5	E	299	307	parallel
Strand 6	E	153	158	parallel
Strand 7	E	327	330	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	134	135	first strand
Strand 2	E	148	149	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	3	10	first strand
Strand 2	F	13	17	anti-parallel
Strand 3	F	58	63	anti-parallel
Strand 4	F	44	53	anti-parallel
Strand 5	F	29	34	anti-parallel
Strand 6	F	75	78	anti-parallel
Strand 7	F	3	10	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	84	86	first strand
Strand 2	F	115	117	anti-parallel

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There are 8 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	95	96	first strand
Strand 2	F	211	216	parallel
Strand 3	F	183	188	parallel
Strand 4	F	246	251	parallel
Strand 5	F	299	305	parallel
Strand 6	F	153	157	parallel
Strand 7	F	327	330	parallel
Strand 8	F	350	351	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	134	135	first strand
Strand 2	F	148	149	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	133	136	first strand
Strand 2	G	115	117	parallel
Strand 3	G	76	80	parallel
Strand 4	G	167	175	parallel
Strand 5	G	181	187	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	204	205	first strand
Strand 2	H	41	45	parallel
Strand 3	H	66	70	anti-parallel
Strand 4	H	75	78	anti-parallel
Strand 5	H	6	10	parallel
Strand 6	H	13	16	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	23	24	first strand
Strand 2	H	33	34	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	48	49	first strand
Strand 2	H	62	63	anti-parallel

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There are 11 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	38	40	first strand
Strand 2	I	7	10	parallel
Strand 3	I	49	53	anti-parallel
Strand 4	I	56	59	anti-parallel
Strand 5	I	102	109	anti-parallel
Strand 6	I	165	172	anti-parallel
Strand 7	I	129	132	anti-parallel
Strand 8	I	138	144	anti-parallel
Strand 9	I	149	153	anti-parallel
Strand 10	I	119	121	anti-parallel
Strand 11	I	102	109	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	174	177	first strand
Strand 2	I	203	206	anti-parallel

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There are 8 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	185	186	first strand
Strand 2	I	299	304	parallel
Strand 3	I	270	276	parallel
Strand 4	I	333	338	parallel
Strand 5	I	390	399	parallel
Strand 6	I	244	248	parallel
Strand 7	I	419	422	parallel
Strand 8	I	435	436	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	174	177	first strand
Strand 2	J	203	206	anti-parallel

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There are 8 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	185	186	first strand
Strand 2	J	299	304	parallel
Strand 3	J	270	276	parallel
Strand 4	J	333	338	parallel
Strand 5	J	390	399	parallel
Strand 6	J	244	248	parallel
Strand 7	J	418	422	parallel
Strand 8	J	441	442	anti-parallel

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There are 11 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	38	39	first strand
Strand 2	K	7	10	parallel
Strand 3	K	49	53	anti-parallel
Strand 4	K	56	59	anti-parallel
Strand 5	K	102	113	anti-parallel
Strand 6	K	165	172	anti-parallel
Strand 7	K	129	133	anti-parallel
Strand 8	K	138	144	anti-parallel
Strand 9	K	149	153	anti-parallel
Strand 10	K	116	121	anti-parallel
Strand 11	K	102	113	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	174	177	first strand
Strand 2	K	203	206	anti-parallel

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There are 8 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	185	186	first strand
Strand 2	K	299	304	parallel
Strand 3	K	270	276	parallel
Strand 4	K	333	338	parallel
Strand 5	K	390	398	parallel
Strand 6	K	244	247	parallel
Strand 7	K	418	421	parallel
Strand 8	K	441	442	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	223	224	first strand
Strand 2	K	237	238	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9JC1

Analysis of interatomic Contacts of Structural Units in PDB entry:
9JC1