Analysis of interatomic Contacts of Structural Units in PDB entry:
9JC2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9JC2 entry

There are 21 chains in PDB entry 9JC2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 15LYS 232
B
 PHE 15LYS 232
C
 PHE 15LYS 232
D
 ARG 10ILE 255
E
 HIS 5ARG 84
F
 GLY 9LYS 70
G
 THR 10GLU 63
H
 SER 7LYS 70
I
 ILE 11GLU 63
J
 SER 7LYS 70
K
 SER 7GLU 63
L
 SER 2ARG 72
M
 SER 2ARG 72
N
 SER 2ARG 72
O
 SER 2ARG 72
P
 SER 2ARG 72
Q
 SER 2ARG 72
R
 SER 2ARG 72
S
 SER 2ARG 72
T
 SER 2ARG 72
U
 SER 2ARG 72
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 57 helices in PDB entry 9JC2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
16 38Right-handed alpha
Helix 2
AA2
A
47 66Right-handed alpha
Helix 3
AA3
A
75 93Right-handed alpha
Helix 4
AA4
A
114 131Right-handed alpha
Helix 5
AA5
A
155 191Right-handed alpha
Helix 6
AA6
A
199 232Right-handed alpha
Helix 7
AA7
B
16 38Right-handed alpha
Helix 8
AA8
B
47 66Right-handed alpha
Helix 9
AA9
B
75 93Right-handed alpha
Helix 10
AB1
B
115 131Right-handed alpha
Helix 11
AB2
B
155 191Right-handed alpha
Helix 12
AB3
B
199 232Right-handed alpha
Helix 13
AB4
C
16 38Right-handed alpha
Helix 14
AB5
C
47 66Right-handed alpha
Helix 15
AB6
C
75 93Right-handed alpha
Helix 16
AB7
C
113 131Right-handed alpha
Helix 17
AB8
C
155 191Right-handed alpha
Helix 18
AB9
C
200 232Right-handed alpha
Helix 19
AC1
D
11 42Right-handed alpha
Helix 20
AC2
D
42 57Right-handed alpha
Helix 21
AC3
D
65 69Right-handed 310
Helix 22
AC4
D
90 107Right-handed alpha
Helix 23
AC5
D
119 130Right-handed alpha
Helix 24
AC6
D
146 163Right-handed alpha
Helix 25
AC7
D
208 255Right-handed alpha
Helix 26
AC8
F
10 70Right-handed alpha
Helix 27
AC9
G
11 63Right-handed alpha
Helix 28
AD1
H
8 70Right-handed alpha
Helix 29
AD2
I
12 23Right-handed alpha
Helix 30
AD3
I
23 63Right-handed alpha
Helix 31
AD4
J
9 70Right-handed alpha
Helix 32
AD5
K
10 63Right-handed alpha
Helix 33
AD6
L
3 37Right-handed alpha
Helix 34
AD7
L
40 50Right-handed alpha
Helix 35
AD8
L
51 72Right-handed alpha
Helix 36
AD9
M
3 37Right-handed alpha
Helix 37
AE1
M
40 72Right-handed alpha
Helix 38
AE2
N
3 37Right-handed alpha
Helix 39
AE3
N
40 56Right-handed alpha
Helix 40
AE4
N
57 72Right-handed alpha
Helix 41
AE5
O
3 37Right-handed alpha
Helix 42
AE6
O
40 72Right-handed alpha
Helix 43
AE7
P
3 37Right-handed alpha
Helix 44
AE8
P
40 72Right-handed alpha
Helix 45
AE9
Q
3 37Right-handed alpha
Helix 46
AF1
Q
40 72Right-handed alpha
Helix 47
AF2
R
3 37Right-handed alpha
Helix 48
AF3
R
40 56Right-handed alpha
Helix 49
AF4
R
57 72Right-handed alpha
Helix 50
AF5
S
3 37Right-handed alpha
Helix 51
AF6
S
40 72Right-handed alpha
Helix 52
AF7
T
3 37Right-handed alpha
Helix 53
AF8
T
40 56Right-handed alpha
Helix 54
AF9
T
57 72Right-handed alpha
Helix 55
AG1
U
3 37Right-handed alpha
Helix 56
AG2
U
40 56Right-handed alpha
Helix 57
AG3
U
56 72Right-handed alpha
Back to top of page

There are 3 sheets in PDB entry 9JC2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
133 136first strand
Strand 2
D
115 117parallel
Strand 3
D
77 80parallel
Strand 4
D
168 175parallel
Strand 5
D
181 186anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
204 205first strand
Strand 2
E
41 45parallel
Strand 3
E
66 70anti-parallel
Strand 4
E
75 78anti-parallel
Strand 5
E
8 9parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
31 34first strand
Strand 2
E
23 26anti-parallel
Strand 3
E
51 52anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il