Analysis of interatomic Contacts of Structural Units in PDB entry:
9JC7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9JC7 entry

There are 2 chains in PDB entry 9JC7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ALA 425
B
 MET 1ALA 425
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 9JC7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 17Right-handed alpha
Helix 2
AA2
A
42 44Right-handed 310
Helix 3
AA3
A
45 50Right-handed alpha
Helix 4
AA4
A
75 79Right-handed 310
Helix 5
AA5
A
101 115Right-handed alpha
Helix 6
AA6
A
120 122Right-handed 310
Helix 7
AA7
A
132 142Right-handed alpha
Helix 8
AA8
A
154 158Right-handed alpha
Helix 9
AA9
A
230 238Right-handed alpha
Helix 10
AB1
A
242 245Right-handed 310
Helix 11
AB2
A
246 261Right-handed alpha
Helix 12
AB3
A
267 286Right-handed alpha
Helix 13
AB4
A
293 313Right-handed alpha
Helix 14
AB5
A
319 322Right-handed 310
Helix 15
AB6
A
323 332Right-handed alpha
Helix 16
AB7
A
335 341Right-handed alpha
Helix 17
AB8
A
341 374Right-handed alpha
Helix 18
AB9
A
380 390Right-handed alpha
Helix 19
AC1
A
394 405Right-handed alpha
Helix 20
AC2
A
410 425Right-handed alpha
Helix 21
AC3
B
2 17Right-handed alpha
Helix 22
AC4
B
42 44Right-handed 310
Helix 23
AC5
B
45 50Right-handed alpha
Helix 24
AC6
B
75 79Right-handed 310
Helix 25
AC7
B
101 115Right-handed alpha
Helix 26
AC8
B
120 122Right-handed 310
Helix 27
AC9
B
132 142Right-handed alpha
Helix 28
AD1
B
154 158Right-handed alpha
Helix 29
AD2
B
230 238Right-handed alpha
Helix 30
AD3
B
242 245Right-handed 310
Helix 31
AD4
B
246 261Right-handed alpha
Helix 32
AD5
B
267 286Right-handed alpha
Helix 33
AD6
B
293 313Right-handed alpha
Helix 34
AD7
B
319 322Right-handed 310
Helix 35
AD8
B
323 332Right-handed alpha
Helix 36
AD9
B
335 341Right-handed alpha
Helix 37
AE1
B
341 374Right-handed alpha
Helix 38
AE2
B
380 390Right-handed alpha
Helix 39
AE3
B
394 404Right-handed alpha
Helix 40
AE4
B
410 425Right-handed alpha
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There are 6 sheets in PDB entry 9JC7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
20 21first strand
Strand 2
A
59 67parallel
Strand 3
A
88 96anti-parallel
Strand 4
A
216 229anti-parallel
Strand 5
A
197 210anti-parallel
Strand 6
A
166 177anti-parallel
Strand 7
A
124 129anti-parallel
Strand 8
A
150 153parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
20 21first strand
Strand 2
A
59 67parallel
Strand 3
A
88 96anti-parallel
Strand 4
A
216 229anti-parallel
Strand 5
A
197 210anti-parallel
Strand 6
A
166 177anti-parallel
Strand 7
A
159 161anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
378 379first strand
Strand 2
A
408 409parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
20 21first strand
Strand 2
B
59 67parallel
Strand 3
B
88 96anti-parallel
Strand 4
B
216 229anti-parallel
Strand 5
B
197 210anti-parallel
Strand 6
B
166 177anti-parallel
Strand 7
B
124 129anti-parallel
Strand 8
B
150 153parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
20 21first strand
Strand 2
B
59 67parallel
Strand 3
B
88 96anti-parallel
Strand 4
B
216 229anti-parallel
Strand 5
B
197 210anti-parallel
Strand 6
B
166 177anti-parallel
Strand 7
B
159 161anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
378 379first strand
Strand 2
B
408 409parallel
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