Analysis of interatomic Contacts of Structural Units in PDB entry:
9JCA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9JCA entry

There is 1 chain in PDB entry 9JCA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 24LEU 458
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 9JCA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
60 66Right-handed alpha
Helix 2
AA2
A
118 124Right-handed alpha
Helix 3
AA3
A
131 137Right-handed alpha
Helix 4
AA4
A
137 149Right-handed alpha
Helix 5
AA5
A
167 186Right-handed alpha
Helix 6
AA6
A
200 217Right-handed alpha
Helix 7
AA7
A
233 242Right-handed alpha
Helix 8
AA8
A
246 261Right-handed alpha
Helix 9
AA9
A
261 272Right-handed alpha
Helix 10
AB1
A
273 284Right-handed alpha
Helix 11
AB2
A
289 296Right-handed alpha
Helix 12
AB3
A
301 306Right-handed alpha
Helix 13
AB4
A
316 324Right-handed alpha
Helix 14
AB5
A
354 368Right-handed alpha
Helix 15
AB6
A
381 389Right-handed alpha
Helix 16
AB7
A
390 402Right-handed alpha
Helix 17
AB8
A
424 430Right-handed alpha
Helix 18
AB9
A
430 440Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 9JCA.

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
52 57first strand
Strand 2
A
69 78anti-parallel
Strand 3
A
84 93anti-parallel
Strand 4
A
152 156anti-parallel
Strand 5
A
102 107parallel
Strand 6
A
193 198parallel
Strand 7
A
222 228parallel
Strand 8
A
341 347parallel
Strand 9
A
371 377parallel
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