Analysis of interatomic Contacts of Structural Units in PDB entry:
9JCB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9JCB entry

There are 6 chains in PDB entry 9JCB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 28ILE 451
B
 GLN 28ILE 451
C
 GLN 28ILE 451
D
 GLN 28ILE 451
E
 GLN 28ILE 451
F
 GLN 28ILE 451
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are122 helices in PDB entry 9JCB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
43 47Right-handed 310
Helix 2
AA2
A
60 67Right-handed alpha
Helix 3
AA3
A
114 117Right-handed 310
Helix 4
AA4
A
118 124Right-handed alpha
Helix 5
AA5
A
132 136Right-handed 310
Helix 6
AA6
A
138 149Right-handed alpha
Helix 7
AA7
A
167 187Right-handed alpha
Helix 8
AA8
A
200 217Right-handed alpha
Helix 9
AA9
A
233 242Right-handed alpha
Helix 10
AB1
A
248 262Right-handed alpha
Helix 11
AB2
A
262 273Right-handed alpha
Helix 12
AB3
A
274 286Right-handed alpha
Helix 13
AB4
A
290 298Right-handed alpha
Helix 14
AB5
A
302 307Right-handed alpha
Helix 15
AB6
A
309 314Right-handed 310
Helix 16
AB7
A
317 326Right-handed alpha
Helix 17
AB8
A
355 369Right-handed alpha
Helix 18
AB9
A
382 390Right-handed alpha
Helix 19
AC1
A
390 403Right-handed alpha
Helix 20
AC2
A
421 427Right-handed alpha
Helix 21
AC3
A
427 438Right-handed alpha
Helix 22
AC4
B
43 47Right-handed 310
Helix 23
AC5
B
60 67Right-handed alpha
Helix 24
AC6
B
114 117Right-handed 310
Helix 25
AC7
B
118 124Right-handed alpha
Helix 26
AC8
B
129 136Right-handed 310
Helix 27
AC9
B
138 149Right-handed alpha
Helix 28
AD1
B
167 187Right-handed alpha
Helix 29
AD2
B
200 217Right-handed alpha
Helix 30
AD3
B
233 242Right-handed alpha
Helix 31
AD4
B
248 262Right-handed alpha
Helix 32
AD5
B
262 270Right-handed alpha
Helix 33
AD6
B
271 273Right-handed 310
Helix 34
AD7
B
274 286Right-handed alpha
Helix 35
AD8
B
290 298Right-handed alpha
Helix 36
AD9
B
302 306Right-handed 310
Helix 37
AE1
B
309 315Right-handed 310
Helix 38
AE2
B
317 325Right-handed alpha
Helix 39
AE3
B
355 369Right-handed alpha
Helix 40
AE4
B
382 390Right-handed alpha
Helix 41
AE5
B
390 403Right-handed alpha
Helix 42
AE6
B
421 426Right-handed alpha
Helix 43
AE7
B
427 436Right-handed alpha
Helix 44
AE8
C
43 47Right-handed 310
Helix 45
AE9
C
60 67Right-handed alpha
Helix 46
AF1
C
114 117Right-handed 310
Helix 47
AF2
C
118 124Right-handed alpha
Helix 48
AF3
C
138 149Right-handed alpha
Helix 49
AF4
C
167 187Right-handed alpha
Helix 50
AF5
C
200 217Right-handed alpha
Helix 51
AF6
C
233 242Right-handed alpha
Helix 52
AF7
C
248 262Right-handed alpha
Helix 53
AF8
C
262 270Right-handed alpha
Helix 54
AF9
C
274 286Right-handed alpha
Helix 55
AG1
C
290 298Right-handed alpha
Helix 56
AG2
C
302 307Right-handed alpha
Helix 57
AG3
C
317 325Right-handed alpha
Helix 58
AG4
C
355 369Right-handed alpha
Helix 59
AG5
C
382 390Right-handed alpha
Helix 60
AG6
C
390 403Right-handed alpha
Helix 61
AG7
C
421 426Right-handed alpha
Helix 62
AG8
C
427 436Right-handed alpha
Helix 63
AG9
D
31 35Right-handed 310
Helix 64
AH1
D
41 47Right-handed 310
Helix 65
AH2
D
60 67Right-handed alpha
Helix 66
AH3
D
118 124Right-handed alpha
Helix 67
AH4
D
132 136Right-handed 310
Helix 68
AH5
D
138 150Right-handed alpha
Helix 69
AH6
D
167 187Right-handed alpha
Helix 70
AH7
D
200 217Right-handed alpha
Helix 71
AH8
D
233 242Right-handed alpha
Helix 72
AH9
D
248 262Right-handed alpha
Helix 73
AI1
D
262 273Right-handed alpha
Helix 74
AI2
D
274 286Right-handed alpha
Helix 75
AI3
D
290 298Right-handed alpha
Helix 76
AI4
D
302 307Right-handed alpha
Helix 77
AI5
D
317 325Right-handed alpha
Helix 78
AI6
D
355 369Right-handed alpha
Helix 79
AI7
D
382 390Right-handed alpha
Helix 80
AI8
D
390 403Right-handed alpha
Helix 81
AI9
D
421 426Right-handed alpha
Helix 82
AJ1
D
427 436Right-handed alpha
Helix 83
AJ2
E
43 47Right-handed 310
Helix 84
AJ3
E
60 67Right-handed alpha
Helix 85
AJ4
E
114 117Right-handed 310
Helix 86
AJ5
E
118 124Right-handed alpha
Helix 87
AJ6
E
129 136Right-handed 310
Helix 88
AJ7
E
138 149Right-handed alpha
Helix 89
AJ8
E
167 187Right-handed alpha
Helix 90
AJ9
E
200 217Right-handed alpha
Helix 91
AK1
E
233 242Right-handed alpha
Helix 92
AK2
E
248 262Right-handed alpha
Helix 93
AK3
E
262 270Right-handed alpha
Helix 94
AK4
E
271 273Right-handed 310
Helix 95
AK5
E
274 286Right-handed alpha
Helix 96
AK6
E
290 298Right-handed alpha
Helix 97
AK7
E
302 307Right-handed alpha
Helix 98
AK8
E
317 325Right-handed alpha
Helix 99
AK9
E
355 369Right-handed alpha
Helix 100
AL1
E
382 390Right-handed alpha
Helix 101
AL2
E
390 403Right-handed alpha
Helix 102
AL3
E
421 426Right-handed alpha
Helix 103
AL4
E
427 436Right-handed alpha
Helix 104
AL5
F
43 47Right-handed 310
Helix 105
AL6
F
60 67Right-handed alpha
Helix 106
AL7
F
114 117Right-handed 310
Helix 107
AL8
F
118 123Right-handed alpha
Helix 108
AL9
F
138 150Right-handed alpha
Helix 109
AM1
F
167 187Right-handed alpha
Helix 110
AM2
F
200 217Right-handed alpha
Helix 111
AM3
F
233 242Right-handed alpha
Helix 112
AM4
F
248 262Right-handed alpha
Helix 113
AM5
F
262 270Right-handed alpha
Helix 114
AM6
F
274 286Right-handed alpha
Helix 115
AM7
F
290 298Right-handed alpha
Helix 116
AM8
F
302 307Right-handed alpha
Helix 117
AM9
F
317 325Right-handed alpha
Helix 118
AN1
F
355 369Right-handed alpha
Helix 119
AN2
F
382 390Right-handed alpha
Helix 120
AN3
F
390 403Right-handed alpha
Helix 121
AN4
F
421 426Right-handed alpha
Helix 122
AN5
F
427 436Right-handed alpha
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There are 6 sheets in PDB entry 9JCB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
51 58first strand
Strand 2
A
68 78anti-parallel
Strand 3
A
84 94anti-parallel
Strand 4
A
152 156anti-parallel
Strand 5
A
102 107parallel
Strand 6
A
193 199parallel
Strand 7
A
221 228parallel
Strand 8
A
343 348parallel
Strand 9
A
373 378parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
51 58first strand
Strand 2
B
70 78anti-parallel
Strand 3
B
84 92anti-parallel
Strand 4
B
152 156anti-parallel
Strand 5
B
102 107parallel
Strand 6
B
193 199parallel
Strand 7
B
221 228parallel
Strand 8
B
343 348parallel
Strand 9
B
373 378parallel
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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
52 58first strand
Strand 2
C
69 78anti-parallel
Strand 3
C
84 93anti-parallel
Strand 4
C
152 156anti-parallel
Strand 5
C
102 107parallel
Strand 6
C
193 199parallel
Strand 7
C
221 228parallel
Strand 8
C
343 348parallel
Strand 9
C
373 378parallel
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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
52 58first strand
Strand 2
D
70 78anti-parallel
Strand 3
D
84 92anti-parallel
Strand 4
D
152 156anti-parallel
Strand 5
D
102 107parallel
Strand 6
D
193 199parallel
Strand 7
D
221 228parallel
Strand 8
D
342 346parallel
Strand 9
D
372 375parallel
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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
51 58first strand
Strand 2
E
69 78anti-parallel
Strand 3
E
84 93anti-parallel
Strand 4
E
152 156anti-parallel
Strand 5
E
102 107parallel
Strand 6
E
193 199parallel
Strand 7
E
221 228parallel
Strand 8
E
343 348parallel
Strand 9
E
373 378parallel
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There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
52 57first strand
Strand 2
F
69 78anti-parallel
Strand 3
F
84 93anti-parallel
Strand 4
F
152 156anti-parallel
Strand 5
F
102 107parallel
Strand 6
F
193 199parallel
Strand 7
F
221 228parallel
Strand 8
F
342 348parallel
Strand 9
F
372 378parallel
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