Analysis of interatomic Contacts of Structural Units in PDB entry:
9JCC

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9JCC entry

There are 6 chains in PDB entry 9JCC (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 2	GLU 376
B	SER 2	GLU 376
C	SER 2	GLU 376
D	SER 2	GLU 376
E	SER 2	GLU 376
F	SER 2	GLU 376

There are114 helices in PDB entry 9JCC. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	2	12	Right-handed alpha
Helix 2	AA2	A	32	54	Right-handed alpha
Helix 3	AA3	A	73	83	Right-handed alpha
Helix 4	AA4	A	105	121	Right-handed alpha
Helix 5	AA5	A	122	132	Right-handed alpha
Helix 6	AA6	A	132	149	Right-handed alpha
Helix 7	AA7	A	150	154	Right-handed 310
Helix 8	AA8	A	157	160	Right-handed 310
Helix 9	AA9	A	161	166	Right-handed alpha
Helix 10	AB1	A	169	175	Right-handed alpha
Helix 11	AB2	A	189	202	Right-handed alpha
Helix 12	AB3	A	205	230	Right-handed alpha
Helix 13	AB4	A	265	293	Right-handed alpha
Helix 14	AB5	A	294	296	Right-handed 310
Helix 15	AB6	A	301	306	Right-handed alpha
Helix 16	AB7	A	311	317	Right-handed alpha
Helix 17	AB8	A	324	335	Right-handed alpha
Helix 18	AB9	A	344	349	Right-handed alpha
Helix 19	AC1	A	365	374	Right-handed alpha
Helix 20	AC2	B	3	12	Right-handed alpha
Helix 21	AC3	B	32	54	Right-handed alpha
Helix 22	AC4	B	73	83	Right-handed alpha
Helix 23	AC5	B	105	121	Right-handed alpha
Helix 24	AC6	B	122	132	Right-handed alpha
Helix 25	AC7	B	132	149	Right-handed alpha
Helix 26	AC8	B	150	154	Right-handed 310
Helix 27	AC9	B	157	160	Right-handed 310
Helix 28	AD1	B	161	166	Right-handed alpha
Helix 29	AD2	B	169	175	Right-handed alpha
Helix 30	AD3	B	180	184	Right-handed 310
Helix 31	AD4	B	189	202	Right-handed alpha
Helix 32	AD5	B	205	230	Right-handed alpha
Helix 33	AD6	B	265	293	Right-handed alpha
Helix 34	AD7	B	301	306	Right-handed alpha
Helix 35	AD8	B	311	317	Right-handed alpha
Helix 36	AD9	B	324	335	Right-handed alpha
Helix 37	AE1	B	344	349	Right-handed alpha
Helix 38	AE2	B	365	374	Right-handed alpha
Helix 39	AE3	C	3	12	Right-handed alpha
Helix 40	AE4	C	32	54	Right-handed alpha
Helix 41	AE5	C	73	83	Right-handed alpha
Helix 42	AE6	C	105	121	Right-handed alpha
Helix 43	AE7	C	122	132	Right-handed alpha
Helix 44	AE8	C	132	149	Right-handed alpha
Helix 45	AE9	C	150	154	Right-handed 310
Helix 46	AF1	C	157	160	Right-handed 310
Helix 47	AF2	C	161	166	Right-handed alpha
Helix 48	AF3	C	169	175	Right-handed alpha
Helix 49	AF4	C	180	184	Right-handed 310
Helix 50	AF5	C	189	202	Right-handed alpha
Helix 51	AF6	C	205	230	Right-handed alpha
Helix 52	AF7	C	265	293	Right-handed alpha
Helix 53	AF8	C	301	306	Right-handed alpha
Helix 54	AF9	C	311	317	Right-handed alpha
Helix 55	AG1	C	324	335	Right-handed alpha
Helix 56	AG2	C	344	349	Right-handed alpha
Helix 57	AG3	C	365	374	Right-handed alpha
Helix 58	AG4	D	3	12	Right-handed alpha
Helix 59	AG5	D	32	54	Right-handed alpha
Helix 60	AG6	D	73	83	Right-handed alpha
Helix 61	AG7	D	105	121	Right-handed alpha
Helix 62	AG8	D	122	132	Right-handed alpha
Helix 63	AG9	D	132	149	Right-handed alpha
Helix 64	AH1	D	150	154	Right-handed 310
Helix 65	AH2	D	157	160	Right-handed 310
Helix 66	AH3	D	161	166	Right-handed alpha
Helix 67	AH4	D	169	175	Right-handed alpha
Helix 68	AH5	D	189	202	Right-handed alpha
Helix 69	AH6	D	205	230	Right-handed alpha
Helix 70	AH7	D	265	293	Right-handed alpha
Helix 71	AH8	D	301	306	Right-handed alpha
Helix 72	AH9	D	311	317	Right-handed alpha
Helix 73	AI1	D	324	335	Right-handed alpha
Helix 74	AI2	D	344	349	Right-handed alpha
Helix 75	AI3	D	365	374	Right-handed alpha
Helix 76	AI4	E	3	12	Right-handed alpha
Helix 77	AI5	E	32	54	Right-handed alpha
Helix 78	AI6	E	73	83	Right-handed alpha
Helix 79	AI7	E	105	121	Right-handed alpha
Helix 80	AI8	E	122	132	Right-handed alpha
Helix 81	AI9	E	132	149	Right-handed alpha
Helix 82	AJ1	E	150	154	Right-handed 310
Helix 83	AJ2	E	157	160	Right-handed 310
Helix 84	AJ3	E	161	166	Right-handed alpha
Helix 85	AJ4	E	169	175	Right-handed alpha
Helix 86	AJ5	E	180	184	Right-handed 310
Helix 87	AJ6	E	189	202	Right-handed alpha
Helix 88	AJ7	E	205	230	Right-handed alpha
Helix 89	AJ8	E	265	293	Right-handed alpha
Helix 90	AJ9	E	301	306	Right-handed alpha
Helix 91	AK1	E	311	317	Right-handed alpha
Helix 92	AK2	E	324	335	Right-handed alpha
Helix 93	AK3	E	344	349	Right-handed alpha
Helix 94	AK4	E	365	374	Right-handed alpha
Helix 95	AK5	F	3	12	Right-handed alpha
Helix 96	AK6	F	32	54	Right-handed alpha
Helix 97	AK7	F	73	83	Right-handed alpha
Helix 98	AK8	F	105	121	Right-handed alpha
Helix 99	AK9	F	122	132	Right-handed alpha
Helix 100	AL1	F	132	149	Right-handed alpha
Helix 101	AL2	F	150	154	Right-handed 310
Helix 102	AL3	F	157	160	Right-handed 310
Helix 103	AL4	F	161	166	Right-handed alpha
Helix 104	AL5	F	169	175	Right-handed alpha
Helix 105	AL6	F	180	184	Right-handed 310
Helix 106	AL7	F	189	202	Right-handed alpha
Helix 107	AL8	F	205	230	Right-handed alpha
Helix 108	AL9	F	247	251	Right-handed 310
Helix 109	AM1	F	265	293	Right-handed alpha
Helix 110	AM2	F	301	306	Right-handed alpha
Helix 111	AM3	F	311	317	Right-handed alpha
Helix 112	AM4	F	324	335	Right-handed alpha
Helix 113	AM5	F	344	349	Right-handed alpha
Helix 114	AM6	F	365	374	Right-handed alpha

There are 12 sheets in PDB entry 9JCC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	64	66	first strand
Strand 2	A	261	263	anti-parallel
Strand 3	A	239	240	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	89	91	first strand
Strand 2	A	101	103	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	64	66	first strand
Strand 2	B	261	263	anti-parallel
Strand 3	B	239	240	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	89	91	first strand
Strand 2	B	101	103	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	64	66	first strand
Strand 2	C	261	263	anti-parallel
Strand 3	C	239	240	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	89	91	first strand
Strand 2	C	101	103	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	64	66	first strand
Strand 2	D	261	263	anti-parallel
Strand 3	D	239	240	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	89	91	first strand
Strand 2	D	101	103	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	64	66	first strand
Strand 2	E	261	263	anti-parallel
Strand 3	E	239	240	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	89	91	first strand
Strand 2	E	101	103	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	64	66	first strand
Strand 2	F	261	263	anti-parallel
Strand 3	F	239	240	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	89	91	first strand
Strand 2	F	101	103	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9JCC

Analysis of interatomic Contacts of Structural Units in PDB entry:
9JCC