Analysis of interatomic Contacts of Structural Units in PDB entry:
9JCD

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9JCD entry

There are 7 chains in PDB entry 9JCD (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 2	PRO 377
B	SER 2	PRO 377
C	SER 2	PRO 377
D	SER 2	PRO 377
E	SER 2	PRO 377
F	SER 2	PRO 377
G	SER 2	PRO 377

There are140 helices in PDB entry 9JCD. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	2	11	Right-handed alpha
Helix 2	AA2	A	32	54	Right-handed alpha
Helix 3	AA3	A	73	83	Right-handed alpha
Helix 4	AA4	A	104	121	Right-handed alpha
Helix 5	AA5	A	122	132	Right-handed alpha
Helix 6	AA6	A	132	148	Right-handed alpha
Helix 7	AA7	A	149	154	Right-handed 310
Helix 8	AA8	A	161	166	Right-handed alpha
Helix 9	AA9	A	167	169	Right-handed 310
Helix 10	AB1	A	170	175	Right-handed alpha
Helix 11	AB2	A	189	202	Right-handed alpha
Helix 12	AB3	A	203	230	Right-handed alpha
Helix 13	AB4	A	265	293	Right-handed alpha
Helix 14	AB5	A	294	296	Right-handed 310
Helix 15	AB6	A	301	306	Right-handed alpha
Helix 16	AB7	A	310	317	Right-handed alpha
Helix 17	AB8	A	324	337	Right-handed alpha
Helix 18	AB9	A	344	349	Right-handed alpha
Helix 19	AC1	A	361	374	Right-handed alpha
Helix 20	AC2	B	3	11	Right-handed alpha
Helix 21	AC3	B	32	54	Right-handed alpha
Helix 22	AC4	B	73	83	Right-handed alpha
Helix 23	AC5	B	104	121	Right-handed alpha
Helix 24	AC6	B	122	132	Right-handed alpha
Helix 25	AC7	B	132	148	Right-handed alpha
Helix 26	AC8	B	149	154	Right-handed 310
Helix 27	AC9	B	164	169	Right-handed 310
Helix 28	AD1	B	170	175	Right-handed alpha
Helix 29	AD2	B	176	181	Right-handed alpha
Helix 30	AD3	B	184	188	Right-handed 310
Helix 31	AD4	B	189	202	Right-handed alpha
Helix 32	AD5	B	203	230	Right-handed alpha
Helix 33	AD6	B	265	293	Right-handed alpha
Helix 34	AD7	B	301	306	Right-handed alpha
Helix 35	AD8	B	310	317	Right-handed alpha
Helix 36	AD9	B	324	335	Right-handed alpha
Helix 37	AE1	B	344	349	Right-handed alpha
Helix 38	AE2	B	361	374	Right-handed alpha
Helix 39	AE3	C	3	11	Right-handed alpha
Helix 40	AE4	C	32	54	Right-handed alpha
Helix 41	AE5	C	73	83	Right-handed alpha
Helix 42	AE6	C	104	121	Right-handed alpha
Helix 43	AE7	C	122	132	Right-handed alpha
Helix 44	AE8	C	132	148	Right-handed alpha
Helix 45	AE9	C	149	154	Right-handed 310
Helix 46	AF1	C	161	166	Right-handed alpha
Helix 47	AF2	C	167	169	Right-handed 310
Helix 48	AF3	C	170	175	Right-handed alpha
Helix 49	AF4	C	176	181	Right-handed alpha
Helix 50	AF5	C	184	188	Right-handed 310
Helix 51	AF6	C	189	202	Right-handed alpha
Helix 52	AF7	C	204	230	Right-handed alpha
Helix 53	AF8	C	265	293	Right-handed alpha
Helix 54	AF9	C	301	306	Right-handed alpha
Helix 55	AG1	C	310	317	Right-handed alpha
Helix 56	AG2	C	324	337	Right-handed alpha
Helix 57	AG3	C	344	349	Right-handed alpha
Helix 58	AG4	C	361	374	Right-handed alpha
Helix 59	AG5	D	3	11	Right-handed alpha
Helix 60	AG6	D	32	54	Right-handed alpha
Helix 61	AG7	D	73	83	Right-handed alpha
Helix 62	AG8	D	104	121	Right-handed alpha
Helix 63	AG9	D	122	132	Right-handed alpha
Helix 64	AH1	D	132	148	Right-handed alpha
Helix 65	AH2	D	149	154	Right-handed 310
Helix 66	AH3	D	161	166	Right-handed alpha
Helix 67	AH4	D	167	169	Right-handed 310
Helix 68	AH5	D	170	175	Right-handed alpha
Helix 69	AH6	D	184	188	Right-handed 310
Helix 70	AH7	D	189	202	Right-handed alpha
Helix 71	AH8	D	203	230	Right-handed alpha
Helix 72	AH9	D	247	251	Right-handed 310
Helix 73	AI1	D	265	293	Right-handed alpha
Helix 74	AI2	D	294	296	Right-handed 310
Helix 75	AI3	D	301	306	Right-handed alpha
Helix 76	AI4	D	310	317	Right-handed alpha
Helix 77	AI5	D	324	336	Right-handed alpha
Helix 78	AI6	D	344	349	Right-handed alpha
Helix 79	AI7	D	361	374	Right-handed alpha
Helix 80	AI8	E	3	11	Right-handed alpha
Helix 81	AI9	E	32	54	Right-handed alpha
Helix 82	AJ1	E	73	83	Right-handed alpha
Helix 83	AJ2	E	104	121	Right-handed alpha
Helix 84	AJ3	E	122	132	Right-handed alpha
Helix 85	AJ4	E	132	149	Right-handed alpha
Helix 86	AJ5	E	150	154	Right-handed 310
Helix 87	AJ6	E	161	166	Right-handed alpha
Helix 88	AJ7	E	167	169	Right-handed 310
Helix 89	AJ8	E	170	175	Right-handed alpha
Helix 90	AJ9	E	176	183	Right-handed alpha
Helix 91	AK1	E	184	188	Right-handed 310
Helix 92	AK2	E	189	202	Right-handed alpha
Helix 93	AK3	E	204	230	Right-handed alpha
Helix 94	AK4	E	265	293	Right-handed alpha
Helix 95	AK5	E	301	306	Right-handed alpha
Helix 96	AK6	E	310	317	Right-handed alpha
Helix 97	AK7	E	324	337	Right-handed alpha
Helix 98	AK8	E	344	349	Right-handed alpha
Helix 99	AK9	E	361	374	Right-handed alpha
Helix 100	AL1	F	3	11	Right-handed alpha
Helix 101	AL2	F	32	54	Right-handed alpha
Helix 102	AL3	F	73	83	Right-handed alpha
Helix 103	AL4	F	105	121	Right-handed alpha
Helix 104	AL5	F	122	132	Right-handed alpha
Helix 105	AL6	F	132	148	Right-handed alpha
Helix 106	AL7	F	149	154	Right-handed 310
Helix 107	AL8	F	161	166	Right-handed alpha
Helix 108	AL9	F	167	169	Right-handed 310
Helix 109	AM1	F	170	175	Right-handed alpha
Helix 110	AM2	F	176	181	Right-handed alpha
Helix 111	AM3	F	184	188	Right-handed 310
Helix 112	AM4	F	189	202	Right-handed alpha
Helix 113	AM5	F	204	230	Right-handed alpha
Helix 114	AM6	F	265	293	Right-handed alpha
Helix 115	AM7	F	294	296	Right-handed 310
Helix 116	AM8	F	301	306	Right-handed alpha
Helix 117	AM9	F	308	317	Right-handed alpha
Helix 118	AN1	F	324	337	Right-handed alpha
Helix 119	AN2	F	344	349	Right-handed alpha
Helix 120	AN3	F	361	374	Right-handed alpha
Helix 121	AN4	G	3	11	Right-handed alpha
Helix 122	AN5	G	32	54	Right-handed alpha
Helix 123	AN6	G	73	83	Right-handed alpha
Helix 124	AN7	G	104	121	Right-handed alpha
Helix 125	AN8	G	122	132	Right-handed alpha
Helix 126	AN9	G	132	148	Right-handed alpha
Helix 127	AO1	G	149	154	Right-handed 310
Helix 128	AO2	G	161	166	Right-handed alpha
Helix 129	AO3	G	167	169	Right-handed 310
Helix 130	AO4	G	170	175	Right-handed alpha
Helix 131	AO5	G	176	181	Right-handed alpha
Helix 132	AO6	G	184	188	Right-handed 310
Helix 133	AO7	G	189	202	Right-handed alpha
Helix 134	AO8	G	203	230	Right-handed alpha
Helix 135	AO9	G	265	293	Right-handed alpha
Helix 136	AP1	G	301	306	Right-handed alpha
Helix 137	AP2	G	310	317	Right-handed alpha
Helix 138	AP3	G	324	336	Right-handed alpha
Helix 139	AP4	G	344	349	Right-handed alpha
Helix 140	AP5	G	361	374	Right-handed alpha

There are 14 sheets in PDB entry 9JCD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	64	66	first strand
Strand 2	A	258	263	anti-parallel
Strand 3	A	239	242	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	89	90	first strand
Strand 2	A	102	103	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	64	66	first strand
Strand 2	B	258	263	anti-parallel
Strand 3	B	239	242	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	89	90	first strand
Strand 2	B	102	103	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	64	66	first strand
Strand 2	C	258	263	anti-parallel
Strand 3	C	239	242	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	89	91	first strand
Strand 2	C	101	103	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	64	66	first strand
Strand 2	D	258	263	anti-parallel
Strand 3	D	239	242	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	89	91	first strand
Strand 2	D	101	103	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	64	66	first strand
Strand 2	E	258	263	anti-parallel
Strand 3	E	239	242	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	89	90	first strand
Strand 2	E	102	103	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	64	66	first strand
Strand 2	F	258	263	anti-parallel
Strand 3	F	239	242	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	89	90	first strand
Strand 2	F	102	103	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	64	66	first strand
Strand 2	G	258	263	anti-parallel
Strand 3	G	239	242	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	89	91	first strand
Strand 2	G	101	103	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9JCD

Analysis of interatomic Contacts of Structural Units in PDB entry:
9JCD