Analysis of interatomic Contacts of Structural Units in PDB entry:
9JCH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9JCH entry

There are 6 chains in PDB entry 9JCH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2GLU 376
B
 SER 2GLU 376
C
 SER 2GLU 376
D
 SER 2GLU 376
E
 SER 2GLU 376
F
 SER 2GLU 376
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 99 helices in PDB entry 9JCH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 12Right-handed alpha
Helix 2
AA2
A
32 54Right-handed alpha
Helix 3
AA3
A
73 86Right-handed alpha
Helix 4
AA4
A
105 132Right-handed alpha
Helix 5
AA5
A
132 148Right-handed alpha
Helix 6
AA6
A
148 155Right-handed alpha
Helix 7
AA7
A
176 184Right-handed alpha
Helix 8
AA8
A
189 202Right-handed alpha
Helix 9
AA9
A
205 230Right-handed alpha
Helix 10
AB1
A
265 293Right-handed alpha
Helix 11
AB2
A
301 306Right-handed alpha
Helix 12
AB3
A
310 317Right-handed alpha
Helix 13
AB4
A
324 336Right-handed alpha
Helix 14
AB5
A
344 349Right-handed alpha
Helix 15
AB6
A
365 374Right-handed alpha
Helix 16
AB7
B
3 12Right-handed alpha
Helix 17
AB8
B
32 54Right-handed alpha
Helix 18
AB9
B
73 83Right-handed alpha
Helix 19
AC1
B
105 132Right-handed alpha
Helix 20
AC2
B
132 149Right-handed alpha
Helix 21
AC3
B
150 154Right-handed 310
Helix 22
AC4
B
157 161Right-handed 310
Helix 23
AC5
B
169 175Right-handed alpha
Helix 24
AC6
B
189 202Right-handed alpha
Helix 25
AC7
B
205 230Right-handed alpha
Helix 26
AC8
B
247 251Right-handed 310
Helix 27
AC9
B
265 293Right-handed alpha
Helix 28
AD1
B
301 306Right-handed alpha
Helix 29
AD2
B
311 317Right-handed alpha
Helix 30
AD3
B
324 336Right-handed alpha
Helix 31
AD4
B
344 349Right-handed alpha
Helix 32
AD5
B
365 374Right-handed alpha
Helix 33
AD6
C
3 12Right-handed alpha
Helix 34
AD7
C
32 54Right-handed alpha
Helix 35
AD8
C
73 83Right-handed alpha
Helix 36
AD9
C
105 121Right-handed alpha
Helix 37
AE1
C
122 132Right-handed alpha
Helix 38
AE2
C
132 147Right-handed alpha
Helix 39
AE3
C
149 156Right-handed alpha
Helix 40
AE4
C
176 183Right-handed alpha
Helix 41
AE5
C
189 202Right-handed alpha
Helix 42
AE6
C
205 230Right-handed alpha
Helix 43
AE7
C
265 294Right-handed alpha
Helix 44
AE8
C
301 306Right-handed alpha
Helix 45
AE9
C
311 317Right-handed alpha
Helix 46
AF1
C
324 335Right-handed alpha
Helix 47
AF2
C
344 349Right-handed alpha
Helix 48
AF3
C
365 374Right-handed alpha
Helix 49
AF4
D
3 12Right-handed alpha
Helix 50
AF5
D
32 54Right-handed alpha
Helix 51
AF6
D
73 83Right-handed alpha
Helix 52
AF7
D
105 132Right-handed alpha
Helix 53
AF8
D
132 158Right-handed alpha
Helix 54
AF9
D
160 166Right-handed alpha
Helix 55
AG1
D
170 175Right-handed alpha
Helix 56
AG2
D
176 183Right-handed alpha
Helix 57
AG3
D
189 202Right-handed alpha
Helix 58
AG4
D
205 230Right-handed alpha
Helix 59
AG5
D
265 293Right-handed alpha
Helix 60
AG6
D
301 306Right-handed alpha
Helix 61
AG7
D
310 317Right-handed alpha
Helix 62
AG8
D
324 335Right-handed alpha
Helix 63
AG9
D
344 349Right-handed alpha
Helix 64
AH1
D
365 374Right-handed alpha
Helix 65
AH2
E
3 12Right-handed alpha
Helix 66
AH3
E
32 54Right-handed alpha
Helix 67
AH4
E
73 86Right-handed alpha
Helix 68
AH5
E
105 132Right-handed alpha
Helix 69
AH6
E
132 149Right-handed alpha
Helix 70
AH7
E
154 160Right-handed alpha
Helix 71
AH8
E
161 165Right-handed 310
Helix 72
AH9
E
169 175Right-handed alpha
Helix 73
AI1
E
177 183Right-handed alpha
Helix 74
AI2
E
189 202Right-handed alpha
Helix 75
AI3
E
205 230Right-handed alpha
Helix 76
AI4
E
247 251Right-handed 310
Helix 77
AI5
E
265 294Right-handed alpha
Helix 78
AI6
E
301 306Right-handed alpha
Helix 79
AI7
E
310 317Right-handed alpha
Helix 80
AI8
E
324 336Right-handed alpha
Helix 81
AI9
E
344 349Right-handed alpha
Helix 82
AJ1
E
365 374Right-handed alpha
Helix 83
AJ2
F
3 12Right-handed alpha
Helix 84
AJ3
F
32 54Right-handed alpha
Helix 85
AJ4
F
73 83Right-handed alpha
Helix 86
AJ5
F
105 148Right-handed alpha
Helix 87
AJ6
F
150 158Right-handed alpha
Helix 88
AJ7
F
159 166Right-handed alpha
Helix 89
AJ8
F
169 175Right-handed alpha
Helix 90
AJ9
F
176 181Right-handed alpha
Helix 91
AK1
F
189 200Right-handed alpha
Helix 92
AK2
F
205 230Right-handed alpha
Helix 93
AK3
F
265 293Right-handed alpha
Helix 94
AK4
F
294 296Right-handed 310
Helix 95
AK5
F
301 306Right-handed alpha
Helix 96
AK6
F
311 317Right-handed alpha
Helix 97
AK7
F
324 336Right-handed alpha
Helix 98
AK8
F
344 349Right-handed alpha
Helix 99
AK9
F
365 374Right-handed alpha
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There are 12 sheets in PDB entry 9JCH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
64 66first strand
Strand 2
A
261 263anti-parallel
Strand 3
A
239 240anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
89 91first strand
Strand 2
A
101 103anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
64 66first strand
Strand 2
B
261 263anti-parallel
Strand 3
B
239 240anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
89 91first strand
Strand 2
B
101 103anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
64 66first strand
Strand 2
C
261 263anti-parallel
Strand 3
C
239 240anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
89 91first strand
Strand 2
C
101 103anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
64 66first strand
Strand 2
D
261 263anti-parallel
Strand 3
D
239 240anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
90 92first strand
Strand 2
D
100 102anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
64 66first strand
Strand 2
E
261 263anti-parallel
Strand 3
E
239 240anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
89 92first strand
Strand 2
E
100 103anti-parallel
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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
64 66first strand
Strand 2
F
257 263anti-parallel
Strand 3
F
239 243anti-parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
89 92first strand
Strand 2
F
100 103anti-parallel
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