Analysis of interatomic Contacts of Structural Units in PDB entry:
9JCJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9JCJ entry

There are 7 chains in PDB entry 9JCJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 2	PRO 377
B	SER 2	PRO 377
C	SER 2	PRO 377
D	SER 2	PRO 377
E	SER 2	PRO 377
F	SER 2	PRO 377
G	SER 2	PRO 377

There are134 helices in PDB entry 9JCJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	2	11	Right-handed alpha
Helix 2	AA2	A	32	54	Right-handed alpha
Helix 3	AA3	A	73	83	Right-handed alpha
Helix 4	AA4	A	105	121	Right-handed alpha
Helix 5	AA5	A	122	132	Right-handed alpha
Helix 6	AA6	A	133	156	Right-handed alpha
Helix 7	AA7	A	170	175	Right-handed alpha
Helix 8	AA8	A	175	184	Right-handed alpha
Helix 9	AA9	A	191	202	Right-handed alpha
Helix 10	AB1	A	205	230	Right-handed alpha
Helix 11	AB2	A	265	293	Right-handed alpha
Helix 12	AB3	A	294	296	Right-handed 310
Helix 13	AB4	A	301	306	Right-handed alpha
Helix 14	AB5	A	308	317	Right-handed alpha
Helix 15	AB6	A	324	336	Right-handed alpha
Helix 16	AB7	A	344	349	Right-handed alpha
Helix 17	AB8	A	361	374	Right-handed alpha
Helix 18	AB9	B	3	11	Right-handed alpha
Helix 19	AC1	B	32	54	Right-handed alpha
Helix 20	AC2	B	73	86	Right-handed alpha
Helix 21	AC3	B	105	121	Right-handed alpha
Helix 22	AC4	B	121	132	Right-handed alpha
Helix 23	AC5	B	132	149	Right-handed alpha
Helix 24	AC6	B	158	163	Right-handed alpha
Helix 25	AC7	B	163	168	Right-handed alpha
Helix 26	AC8	B	189	202	Right-handed alpha
Helix 27	AC9	B	205	230	Right-handed alpha
Helix 28	AD1	B	265	293	Right-handed alpha
Helix 29	AD2	B	294	296	Right-handed 310
Helix 30	AD3	B	301	306	Right-handed alpha
Helix 31	AD4	B	310	317	Right-handed alpha
Helix 32	AD5	B	324	337	Right-handed alpha
Helix 33	AD6	B	344	349	Right-handed alpha
Helix 34	AD7	B	361	374	Right-handed alpha
Helix 35	AD8	C	3	11	Right-handed alpha
Helix 36	AD9	C	32	54	Right-handed alpha
Helix 37	AE1	C	73	83	Right-handed alpha
Helix 38	AE2	C	104	122	Right-handed alpha
Helix 39	AE3	C	122	132	Right-handed alpha
Helix 40	AE4	C	132	148	Right-handed alpha
Helix 41	AE5	C	149	154	Right-handed 310
Helix 42	AE6	C	161	166	Right-handed alpha
Helix 43	AE7	C	167	169	Right-handed 310
Helix 44	AE8	C	170	175	Right-handed alpha
Helix 45	AE9	C	184	188	Right-handed 310
Helix 46	AF1	C	189	202	Right-handed alpha
Helix 47	AF2	C	203	230	Right-handed alpha
Helix 48	AF3	C	265	293	Right-handed alpha
Helix 49	AF4	C	294	296	Right-handed 310
Helix 50	AF5	C	301	306	Right-handed alpha
Helix 51	AF6	C	308	317	Right-handed alpha
Helix 52	AF7	C	324	335	Right-handed alpha
Helix 53	AF8	C	344	349	Right-handed alpha
Helix 54	AF9	C	362	365	Right-handed 310
Helix 55	AG1	C	366	372	Right-handed alpha
Helix 56	AG2	D	3	11	Right-handed alpha
Helix 57	AG3	D	32	54	Right-handed alpha
Helix 58	AG4	D	73	86	Right-handed alpha
Helix 59	AG5	D	104	121	Right-handed alpha
Helix 60	AG6	D	122	132	Right-handed alpha
Helix 61	AG7	D	132	147	Right-handed alpha
Helix 62	AG8	D	148	153	Right-handed alpha
Helix 63	AG9	D	153	158	Right-handed alpha
Helix 64	AH1	D	161	166	Right-handed alpha
Helix 65	AH2	D	190	202	Right-handed alpha
Helix 66	AH3	D	204	230	Right-handed alpha
Helix 67	AH4	D	265	293	Right-handed alpha
Helix 68	AH5	D	301	306	Right-handed alpha
Helix 69	AH6	D	308	317	Right-handed alpha
Helix 70	AH7	D	324	337	Right-handed alpha
Helix 71	AH8	D	344	349	Right-handed alpha
Helix 72	AH9	D	361	365	Right-handed alpha
Helix 73	AI1	D	369	374	Right-handed alpha
Helix 74	AI2	E	3	11	Right-handed alpha
Helix 75	AI3	E	32	54	Right-handed alpha
Helix 76	AI4	E	73	83	Right-handed alpha
Helix 77	AI5	E	105	121	Right-handed alpha
Helix 78	AI6	E	122	132	Right-handed alpha
Helix 79	AI7	E	132	148	Right-handed alpha
Helix 80	AI8	E	149	154	Right-handed 310
Helix 81	AI9	E	164	169	Right-handed 310
Helix 82	AJ1	E	170	175	Right-handed alpha
Helix 83	AJ2	E	176	181	Right-handed alpha
Helix 84	AJ3	E	184	188	Right-handed 310
Helix 85	AJ4	E	189	201	Right-handed alpha
Helix 86	AJ5	E	204	230	Right-handed alpha
Helix 87	AJ6	E	247	251	Right-handed 310
Helix 88	AJ7	E	265	293	Right-handed alpha
Helix 89	AJ8	E	294	296	Right-handed 310
Helix 90	AJ9	E	301	306	Right-handed alpha
Helix 91	AK1	E	310	317	Right-handed alpha
Helix 92	AK2	E	324	335	Right-handed alpha
Helix 93	AK3	E	344	349	Right-handed alpha
Helix 94	AK4	E	361	368	Right-handed alpha
Helix 95	AK5	F	3	11	Right-handed alpha
Helix 96	AK6	F	32	54	Right-handed alpha
Helix 97	AK7	F	73	83	Right-handed alpha
Helix 98	AK8	F	105	121	Right-handed alpha
Helix 99	AK9	F	122	132	Right-handed alpha
Helix 100	AL1	F	132	150	Right-handed alpha
Helix 101	AL2	F	155	166	Right-handed alpha
Helix 102	AL3	F	169	174	Right-handed alpha
Helix 103	AL4	F	176	184	Right-handed alpha
Helix 104	AL5	F	189	202	Right-handed alpha
Helix 105	AL6	F	203	230	Right-handed alpha
Helix 106	AL7	F	247	251	Right-handed 310
Helix 107	AL8	F	265	293	Right-handed alpha
Helix 108	AL9	F	294	296	Right-handed 310
Helix 109	AM1	F	301	306	Right-handed alpha
Helix 110	AM2	F	310	315	Right-handed alpha
Helix 111	AM3	F	324	337	Right-handed alpha
Helix 112	AM4	F	344	349	Right-handed alpha
Helix 113	AM5	F	362	374	Right-handed alpha
Helix 114	AM6	G	3	11	Right-handed alpha
Helix 115	AM7	G	32	54	Right-handed alpha
Helix 116	AM8	G	73	83	Right-handed alpha
Helix 117	AM9	G	104	121	Right-handed alpha
Helix 118	AN1	G	122	132	Right-handed alpha
Helix 119	AN2	G	132	148	Right-handed alpha
Helix 120	AN3	G	149	154	Right-handed 310
Helix 121	AN4	G	158	160	Right-handed 310
Helix 122	AN5	G	161	166	Right-handed alpha
Helix 123	AN6	G	167	169	Right-handed 310
Helix 124	AN7	G	170	175	Right-handed alpha
Helix 125	AN8	G	184	188	Right-handed 310
Helix 126	AN9	G	189	200	Right-handed alpha
Helix 127	AO1	G	204	230	Right-handed alpha
Helix 128	AO2	G	265	293	Right-handed alpha
Helix 129	AO3	G	294	296	Right-handed 310
Helix 130	AO4	G	301	306	Right-handed alpha
Helix 131	AO5	G	310	317	Right-handed alpha
Helix 132	AO6	G	324	336	Right-handed alpha
Helix 133	AO7	G	344	349	Right-handed alpha
Helix 134	AO8	G	362	374	Right-handed alpha

There are 14 sheets in PDB entry 9JCJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	64	66	first strand
Strand 2	A	261	263	anti-parallel
Strand 3	A	239	240	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	89	90	first strand
Strand 2	A	102	103	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	64	66	first strand
Strand 2	B	258	263	anti-parallel
Strand 3	B	239	242	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	89	90	first strand
Strand 2	B	102	103	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	64	66	first strand
Strand 2	C	261	263	anti-parallel
Strand 3	C	239	240	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	89	91	first strand
Strand 2	C	101	103	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	64	66	first strand
Strand 2	D	258	263	anti-parallel
Strand 3	D	239	242	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	89	90	first strand
Strand 2	D	102	103	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	64	66	first strand
Strand 2	E	261	263	anti-parallel
Strand 3	E	239	240	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	89	91	first strand
Strand 2	E	101	103	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	64	66	first strand
Strand 2	F	261	263	anti-parallel
Strand 3	F	239	240	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	89	90	first strand
Strand 2	F	102	103	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	64	66	first strand
Strand 2	G	261	263	anti-parallel
Strand 3	G	239	240	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	89	91	first strand
Strand 2	G	101	103	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9JCJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
9JCJ