Analysis of interatomic Contacts of Structural Units in PDB entry:
9JCM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9JCM entry

There are 2 chains in PDB entry 9JCM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 83LYS 387
B
 GLY 83LYS 387
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 9JCM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
94 105Right-handed alpha
Helix 2
AA2
A
114 123Right-handed alpha
Helix 3
AA3
A
137 145Right-handed alpha
Helix 4
AA4
A
162 169Right-handed alpha
Helix 5
AA5
A
178 197Right-handed alpha
Helix 6
AA6
A
198 208Right-handed alpha
Helix 7
AA7
A
232 245Right-handed alpha
Helix 8
AA8
A
257 265Right-handed alpha
Helix 9
AA9
A
271 276Right-handed alpha
Helix 10
AB1
A
288 292Right-handed 310
Helix 11
AB2
A
296 303Right-handed alpha
Helix 12
AB3
A
314 318Right-handed 310
Helix 13
AB4
A
319 328Right-handed alpha
Helix 14
AB5
A
362 366Right-handed 310
Helix 15
AB6
A
367 386Right-handed alpha
Helix 16
AB7
B
94 105Right-handed alpha
Helix 17
AB8
B
114 123Right-handed alpha
Helix 18
AB9
B
137 143Right-handed alpha
Helix 19
AC1
B
162 169Right-handed alpha
Helix 20
AC2
B
178 197Right-handed alpha
Helix 21
AC3
B
198 208Right-handed alpha
Helix 22
AC4
B
233 246Right-handed alpha
Helix 23
AC5
B
257 265Right-handed alpha
Helix 24
AC6
B
270 277Right-handed alpha
Helix 25
AC7
B
296 301Right-handed alpha
Helix 26
AC8
B
314 318Right-handed 310
Helix 27
AC9
B
319 330Right-handed alpha
Helix 28
AD1
B
367 386Right-handed alpha
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There are 4 sheets in PDB entry 9JCM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
106 109first strand
Strand 2
A
86 89parallel
Strand 3
A
127 131parallel
Strand 4
A
150 154parallel
Strand 5
A
172 175parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
267 268first strand
Strand 2
A
248 252parallel
Strand 3
A
225 229parallel
Strand 4
A
280 283parallel
Strand 5
A
307 311parallel
Strand 6
A
332 337parallel
Strand 7
A
357 359parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
106 108first strand
Strand 2
B
86 89parallel
Strand 3
B
127 130parallel
Strand 4
B
150 153parallel
Strand 5
B
172 175parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
267 268first strand
Strand 2
B
249 252parallel
Strand 3
B
226 229parallel
Strand 4
B
280 283parallel
Strand 5
B
308 311parallel
Strand 6
B
335 337parallel
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