Analysis of interatomic Contacts of Structural Units in PDB entry:
9JCU

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9JCU entry

There are 4 chains in PDB entry 9JCU (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 27	ARG 417
B	GLN 27	ARG 417
C	GLN 27	ARG 417
D	GLN 27	ARG 100

There are 79 helices in PDB entry 9JCU. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	27	36	Right-handed alpha
Helix 2	AA2	A	42	56	Right-handed alpha
Helix 3	AA3	A	61	64	Right-handed 310
Helix 4	AA4	A	65	86	Right-handed alpha
Helix 5	AA5	A	88	90	Right-handed 310
Helix 6	AA6	A	139	146	Right-handed alpha
Helix 7	AA7	A	176	182	Right-handed alpha
Helix 8	AA8	A	187	208	Right-handed alpha
Helix 9	AA9	A	258	265	Right-handed alpha
Helix 10	AB1	A	274	290	Right-handed alpha
Helix 11	AB2	A	298	308	Right-handed alpha
Helix 12	AB3	A	308	313	Right-handed alpha
Helix 13	AB4	A	322	333	Right-handed alpha
Helix 14	AB5	A	345	350	Right-handed alpha
Helix 15	AB6	A	351	355	Right-handed 310
Helix 16	AB7	A	363	367	Right-handed 310
Helix 17	AB8	A	407	411	Right-handed 310
Helix 18	AB9	B	28	36	Right-handed alpha
Helix 19	AC1	B	42	58	Right-handed alpha
Helix 20	AC2	B	61	64	Right-handed 310
Helix 21	AC3	B	65	86	Right-handed alpha
Helix 22	AC4	B	88	90	Right-handed 310
Helix 23	AC5	B	125	130	Right-handed alpha
Helix 24	AC6	B	139	148	Right-handed alpha
Helix 25	AC7	B	176	184	Right-handed alpha
Helix 26	AC8	B	187	208	Right-handed alpha
Helix 27	AC9	B	216	218	Right-handed 310
Helix 28	AD1	B	253	257	Right-handed 310
Helix 29	AD2	B	258	264	Right-handed alpha
Helix 30	AD3	B	273	290	Right-handed alpha
Helix 31	AD4	B	298	308	Right-handed alpha
Helix 32	AD5	B	308	313	Right-handed alpha
Helix 33	AD6	B	322	333	Right-handed alpha
Helix 34	AD7	B	335	339	Right-handed 310
Helix 35	AD8	B	345	350	Right-handed alpha
Helix 36	AD9	B	351	355	Right-handed 310
Helix 37	AE1	B	363	367	Right-handed 310
Helix 38	AE2	B	407	411	Right-handed 310
Helix 39	AE3	C	28	36	Right-handed alpha
Helix 40	AE4	C	42	58	Right-handed alpha
Helix 41	AE5	C	61	64	Right-handed 310
Helix 42	AE6	C	65	86	Right-handed alpha
Helix 43	AE7	C	88	90	Right-handed 310
Helix 44	AE8	C	125	129	Right-handed alpha
Helix 45	AE9	C	138	148	Right-handed alpha
Helix 46	AF1	C	177	184	Right-handed alpha
Helix 47	AF2	C	187	208	Right-handed alpha
Helix 48	AF3	C	216	218	Right-handed 310
Helix 49	AF4	C	258	266	Right-handed alpha
Helix 50	AF5	C	273	290	Right-handed alpha
Helix 51	AF6	C	298	308	Right-handed alpha
Helix 52	AF7	C	308	313	Right-handed alpha
Helix 53	AF8	C	322	333	Right-handed alpha
Helix 54	AF9	C	335	339	Right-handed 310
Helix 55	AG1	C	345	350	Right-handed alpha
Helix 56	AG2	C	351	355	Right-handed 310
Helix 57	AG3	C	363	367	Right-handed 310
Helix 58	AG4	C	407	411	Right-handed 310
Helix 59	AG5	D	28	36	Right-handed alpha
Helix 60	AG6	D	42	58	Right-handed alpha
Helix 61	AG7	D	61	64	Right-handed 310
Helix 62	AG8	D	65	86	Right-handed alpha
Helix 63	AG9	D	88	90	Right-handed 310
Helix 64	AH1	D	125	131	Right-handed alpha
Helix 65	AH2	D	138	146	Right-handed alpha
Helix 66	AH3	D	177	184	Right-handed alpha
Helix 67	AH4	D	187	208	Right-handed alpha
Helix 68	AH5	D	216	218	Right-handed 310
Helix 69	AH6	D	253	257	Right-handed 310
Helix 70	AH7	D	258	263	Right-handed alpha
Helix 71	AH8	D	273	290	Right-handed alpha
Helix 72	AH9	D	298	308	Right-handed alpha
Helix 73	AI1	D	308	313	Right-handed alpha
Helix 74	AI2	D	322	333	Right-handed alpha
Helix 75	AI3	D	335	339	Right-handed 310
Helix 76	AI4	D	345	350	Right-handed alpha
Helix 77	AI5	D	351	355	Right-handed 310
Helix 78	AI6	D	360	367	Right-handed 310
Helix 79	AI7	D	407	411	Right-handed 310

There are 13 sheets in PDB entry 9JCU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	92	100	first strand
Strand 2	A	105	111	anti-parallel
Strand 3	A	116	124	anti-parallel
Strand 4	A	164	169	anti-parallel
Strand 5	A	155	160	anti-parallel
Strand 6	A	415	416	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	210	211	first strand
Strand 2	A	237	238	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	220	222	first strand
Strand 2	A	228	230	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	92	101	first strand
Strand 2	B	104	111	anti-parallel
Strand 3	B	117	124	anti-parallel
Strand 4	B	164	170	anti-parallel
Strand 5	B	155	160	anti-parallel
Strand 6	B	415	416	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	210	211	first strand
Strand 2	B	237	238	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	220	222	first strand
Strand 2	B	228	230	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	92	100	first strand
Strand 2	C	105	111	anti-parallel
Strand 3	C	117	124	anti-parallel
Strand 4	C	164	170	anti-parallel
Strand 5	C	155	160	anti-parallel
Strand 6	C	415	416	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	175	176	first strand
Strand 2	C	220	222	anti-parallel
Strand 3	C	228	230	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	210	211	first strand
Strand 2	C	237	238	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	92	100	first strand
Strand 2	D	105	111	anti-parallel
Strand 3	D	117	124	anti-parallel
Strand 4	D	164	170	anti-parallel
Strand 5	D	155	160	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	175	176	first strand
Strand 2	D	220	222	anti-parallel
Strand 3	D	228	230	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	210	211	first strand
Strand 2	D	237	238	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	244	246	first strand
Strand 2	D	270	272	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9JCU

Analysis of interatomic Contacts of Structural Units in PDB entry:
9JCU