Analysis of interatomic Contacts of Structural Units in PDB entry:
9JCV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9JCV entry

There is 1 chain in PDB entry 9JCV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 47GLN 567
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 9JCV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
47 56Right-handed alpha
Helix 2
AA2
A
60 74Right-handed alpha
Helix 3
AA3
A
76 105Right-handed alpha
Helix 4
AA4
A
109 111Right-handed 310
Helix 5
AA5
A
112 117Right-handed alpha
Helix 6
AA6
A
118 120Right-handed 310
Helix 7
AA7
A
121 152Right-handed alpha
Helix 8
AA8
A
193 202Right-handed alpha
Helix 9
AA9
A
218 238Right-handed alpha
Helix 10
AB1
A
244 266Right-handed alpha
Helix 11
AB2
A
269 279Right-handed alpha
Helix 12
AB3
A
281 286Right-handed 310
Helix 13
AB4
A
287 302Right-handed alpha
Helix 14
AB5
A
308 313Right-handed alpha
Helix 15
AB6
A
314 316Right-handed 310
Helix 16
AB7
A
321 356Right-handed alpha
Helix 17
AB8
A
358 362Right-handed 310
Helix 18
AB9
A
368 381Right-handed alpha
Helix 19
AC1
A
383 418Right-handed alpha
Helix 20
AC2
A
426 444Right-handed alpha
Helix 21
AC3
A
445 448Right-handed 310
Helix 22
AC4
A
451 463Right-handed alpha
Helix 23
AC5
A
466 482Right-handed alpha
Helix 24
AC6
A
484 496Right-handed alpha
Helix 25
AC7
A
502 510Right-handed alpha
Helix 26
AC8
A
510 526Right-handed alpha
Helix 27
AC9
A
539 555Right-handed alpha
Helix 28
AD1
A
555 567Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 9JCV.

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
531 532first strand
Strand 2
A
536 537anti-parallel
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