Analysis of interatomic Contacts of Structural Units in PDB entry:
9JCW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9JCW entry

There are 5 chains in PDB entry 9JCW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 CYS 351ASP 606
F
 PRO 352ASP 606
A
 CYS 351ASP 606
E
 MET 349ASP 606
B
 CYS 351ASP 569
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 71 helices in PDB entry 9JCW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
C
351 363Right-handed alpha
Helix 2
AA2
C
380 400Right-handed alpha
Helix 3
AA3
C
401 423Right-handed alpha
Helix 4
AA4
C
427 443Right-handed alpha
Helix 5
AA5
C
446 457Right-handed alpha
Helix 6
AA6
C
463 468Right-handed alpha
Helix 7
AA7
C
472 482Right-handed alpha
Helix 8
AA8
C
484 492Right-handed alpha
Helix 9
AA9
C
497 519Right-handed alpha
Helix 10
AB1
C
525 547Right-handed alpha
Helix 11
AB2
C
550 571Right-handed alpha
Helix 12
AB3
C
580 605Right-handed alpha
Helix 13
AB4
F
353 363Right-handed alpha
Helix 14
AB5
F
380 400Right-handed alpha
Helix 15
AB6
F
401 423Right-handed alpha
Helix 16
AB7
F
427 444Right-handed alpha
Helix 17
AB8
F
446 457Right-handed alpha
Helix 18
AB9
F
463 468Right-handed alpha
Helix 19
AC1
F
472 482Right-handed alpha
Helix 20
AC2
F
484 492Right-handed alpha
Helix 21
AC3
F
497 519Right-handed alpha
Helix 22
AC4
F
525 547Right-handed alpha
Helix 23
AC5
F
550 571Right-handed alpha
Helix 24
AC6
F
580 606Right-handed alpha
Helix 25
AC7
A
352 363Right-handed alpha
Helix 26
AC8
A
380 400Right-handed alpha
Helix 27
AC9
A
401 423Right-handed alpha
Helix 28
AD1
A
427 444Right-handed alpha
Helix 29
AD2
A
446 457Right-handed alpha
Helix 30
AD3
A
463 468Right-handed alpha
Helix 31
AD4
A
472 482Right-handed alpha
Helix 32
AD5
A
484 492Right-handed alpha
Helix 33
AD6
A
497 519Right-handed alpha
Helix 34
AD7
A
525 547Right-handed alpha
Helix 35
AD8
A
550 571Right-handed alpha
Helix 36
AD9
A
580 606Right-handed alpha
Helix 37
AE1
E
351 363Right-handed alpha
Helix 38
AE2
E
380 400Right-handed alpha
Helix 39
AE3
E
401 423Right-handed alpha
Helix 40
AE4
E
427 444Right-handed alpha
Helix 41
AE5
E
446 457Right-handed alpha
Helix 42
AE6
E
463 468Right-handed alpha
Helix 43
AE7
E
472 482Right-handed alpha
Helix 44
AE8
E
484 492Right-handed alpha
Helix 45
AE9
E
497 519Right-handed alpha
Helix 46
AF1
E
525 547Right-handed alpha
Helix 47
AF2
E
550 571Right-handed alpha
Helix 48
AF3
E
580 606Right-handed alpha
Helix 49
AF4
B
352 363Right-handed alpha
Helix 50
AF5
B
380 400Right-handed alpha
Helix 51
AF6
B
401 423Right-handed alpha
Helix 52
AF7
B
427 443Right-handed alpha
Helix 53
AF8
B
446 457Right-handed alpha
Helix 54
AF9
B
463 468Right-handed alpha
Helix 55
AG1
B
472 482Right-handed alpha
Helix 56
AG2
B
484 492Right-handed alpha
Helix 57
AG3
B
497 519Right-handed alpha
Helix 58
AG4
B
525 547Right-handed alpha
Helix 59
AG5
B
550 571Right-handed alpha
Helix 60
AG6
B
580 606Right-handed alpha
Helix 61
AG7
D
382 401Right-handed alpha
Helix 62
AG8
D
401 423Right-handed alpha
Helix 63
AG9
D
427 444Right-handed alpha
Helix 64
AH1
D
446 457Right-handed alpha
Helix 65
AH2
D
463 468Right-handed alpha
Helix 66
AH3
D
472 482Right-handed alpha
Helix 67
AH4
D
484 492Right-handed alpha
Helix 68
AH5
D
497 519Right-handed alpha
Helix 69
AH6
D
525 547Right-handed alpha
Helix 70
AH7
D
550 571Right-handed alpha
Helix 71
AH8
D
580 606Right-handed alpha
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There are no sheets in PDB entry 9JCW
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il