Analysis of interatomic Contacts of Structural Units in PDB entry:
9JCX

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9JCX entry

There are 3 chains in PDB entry 9JCX (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 112	LYS 254
C	ILE 256	GLU 493
B	LEU 324	LEU 609

There are 19 helices in PDB entry 9JCX. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	128	132	Right-handed 310
Helix 2	AA2	A	177	188	Right-handed alpha
Helix 3	AA3	A	214	217	Right-handed 310
Helix 4	AA4	A	220	223	Right-handed 310
Helix 5	AA5	C	295	299	Right-handed 310
Helix 6	AA6	C	304	306	Right-handed 310
Helix 7	AA7	C	316	320	Right-handed 310
Helix 8	AA8	C	406	411	Right-handed alpha
Helix 9	AA9	C	480	493	Right-handed alpha
Helix 10	AB1	B	328	334	Right-handed alpha
Helix 11	AB2	B	355	363	Right-handed alpha
Helix 12	AB3	B	374	378	Right-handed 310
Helix 13	AB4	B	394	402	Right-handed 310
Helix 14	AB5	B	407	413	Right-handed alpha
Helix 15	AB6	B	432	434	Right-handed 310
Helix 16	AB7	B	442	448	Right-handed alpha
Helix 17	AB8	B	478	484	Right-handed alpha
Helix 18	AB9	B	552	556	Right-handed 310
Helix 19	AC1	B	570	574	Right-handed 310

There are 13 sheets in PDB entry 9JCX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	118	119	first strand
Strand 2	A	126	127	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	149	152	first strand
Strand 2	A	157	162	anti-parallel
Strand 3	A	167	170	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	196	200	first strand
Strand 2	A	236	240	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	209	212	first strand
Strand 2	A	225	228	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	260	261	first strand
Strand 2	C	398	405	anti-parallel
Strand 3	C	424	428	anti-parallel
Strand 4	C	472	476	anti-parallel
Strand 5	C	452	461	anti-parallel
Strand 6	C	444	449	anti-parallel
Strand 7	C	378	383	anti-parallel
Strand 8	C	398	405	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	270	275	first strand
Strand 2	C	278	287	anti-parallel
Strand 3	C	290	293	anti-parallel
Strand 4	C	347	351	anti-parallel
Strand 5	C	326	333	anti-parallel
Strand 6	C	308	312	anti-parallel
Strand 7	C	270	275	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	337	339	first strand
Strand 2	B	435	437	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	345	349	first strand
Strand 2	B	385	392	anti-parallel
Strand 3	B	587	597	anti-parallel
Strand 4	B	422	430	anti-parallel
Strand 5	B	367	371	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	345	349	first strand
Strand 2	B	385	392	anti-parallel
Strand 3	B	587	597	anti-parallel
Strand 4	B	583	584	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	352	354	first strand
Strand 2	B	604	606	parallel
Strand 3	B	382	383	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	459	463	first strand
Strand 2	B	577	581	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	467	468	first strand
Strand 2	B	536	537	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	504	509	first strand
Strand 2	B	512	518	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9JCX

Analysis of interatomic Contacts of Structural Units in PDB entry:
9JCX