Analysis of interatomic Contacts of Structural Units in PDB entry:
9JD0

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9JD0 entry

There are 6 chains in PDB entry 9JD0 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	CYS 113	ASN 249
B	CYS 113	ASN 249
C	ILE 256	GLU 493
D	ILE 256	GLU 493
F	VAL 2	VAL 121
E	VAL 2	SER 123

There are 24 helices in PDB entry 9JD0. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	128	132	Right-handed 310
Helix 2	AA2	A	177	188	Right-handed alpha
Helix 3	AA3	A	220	223	Right-handed 310
Helix 4	AA4	B	128	132	Right-handed 310
Helix 5	AA5	B	142	146	Right-handed 310
Helix 6	AA6	B	177	189	Right-handed alpha
Helix 7	AA7	B	220	223	Right-handed 310
Helix 8	AA8	C	294	298	Right-handed 310
Helix 9	AA9	C	304	306	Right-handed 310
Helix 10	AB1	C	316	320	Right-handed 310
Helix 11	AB2	C	406	411	Right-handed alpha
Helix 12	AB3	C	477	493	Right-handed alpha
Helix 13	AB4	D	294	298	Right-handed 310
Helix 14	AB5	D	304	306	Right-handed 310
Helix 15	AB6	D	316	320	Right-handed 310
Helix 16	AB7	D	406	411	Right-handed alpha
Helix 17	AB8	D	477	492	Right-handed alpha
Helix 18	AB9	F	27	31	Right-handed 310
Helix 19	AC1	F	87	91	Right-handed 310
Helix 20	AC2	F	98	103	Right-handed alpha
Helix 21	AC3	E	27	31	Right-handed 310
Helix 22	AC4	E	87	91	Right-handed 310
Helix 23	AC5	E	98	103	Right-handed alpha
Helix 24	AC6	E	112	114	Right-handed 310

There are 16 sheets in PDB entry 9JD0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	118	119	first strand
Strand 2	A	126	127	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	149	152	first strand
Strand 2	A	157	162	anti-parallel
Strand 3	A	167	170	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	196	200	first strand
Strand 2	A	236	240	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	209	212	first strand
Strand 2	A	225	228	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	118	119	first strand
Strand 2	B	126	127	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	149	152	first strand
Strand 2	B	157	162	anti-parallel
Strand 3	B	167	170	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	196	200	first strand
Strand 2	B	236	240	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	209	212	first strand
Strand 2	B	225	228	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	260	261	first strand
Strand 2	C	398	405	anti-parallel
Strand 3	C	424	428	anti-parallel
Strand 4	C	472	476	anti-parallel
Strand 5	C	452	461	anti-parallel
Strand 6	C	444	449	anti-parallel
Strand 7	C	378	383	anti-parallel
Strand 8	C	398	405	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	270	275	first strand
Strand 2	C	279	285	anti-parallel
Strand 3	C	290	293	anti-parallel
Strand 4	C	347	351	anti-parallel
Strand 5	C	326	333	anti-parallel
Strand 6	C	308	312	anti-parallel
Strand 7	C	270	275	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	260	261	first strand
Strand 2	D	398	405	anti-parallel
Strand 3	D	424	428	anti-parallel
Strand 4	D	472	476	anti-parallel
Strand 5	D	452	461	anti-parallel
Strand 6	D	444	449	anti-parallel
Strand 7	D	378	383	anti-parallel
Strand 8	D	398	405	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	270	275	first strand
Strand 2	D	278	285	anti-parallel
Strand 3	D	290	293	anti-parallel
Strand 4	D	347	351	anti-parallel
Strand 5	D	326	333	anti-parallel
Strand 6	D	308	312	anti-parallel
Strand 7	D	270	275	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	3	7	first strand
Strand 2	F	18	25	anti-parallel
Strand 3	F	78	83	anti-parallel
Strand 4	F	68	72	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	10	11	first strand
Strand 2	F	116	120	parallel
Strand 3	F	92	97	anti-parallel
Strand 4	F	33	39	anti-parallel
Strand 5	F	46	52	anti-parallel
Strand 6	F	58	60	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	3	7	first strand
Strand 2	E	18	25	anti-parallel
Strand 3	E	78	83	anti-parallel
Strand 4	E	68	73	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	12	first strand
Strand 2	E	116	121	parallel
Strand 3	E	92	97	anti-parallel
Strand 4	E	33	39	anti-parallel
Strand 5	E	46	52	anti-parallel
Strand 6	E	58	60	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9JD0

Analysis of interatomic Contacts of Structural Units in PDB entry:
9JD0