Analysis of interatomic Contacts of Structural Units in PDB entry:
9JD1

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9JD1 entry

There are 4 chains in PDB entry 9JD1 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
D	ILE 256	PHE 494
A	ASN 1	GLU 216
B	GLN 1	PRO 229
C	ILE 118	LEU 248

There are 19 helices in PDB entry 9JD1. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	D	294	299	Right-handed 310
Helix 2	AA2	D	304	306	Right-handed 310
Helix 3	AA3	D	316	320	Right-handed 310
Helix 4	AA4	D	406	411	Right-handed alpha
Helix 5	AA5	D	477	493	Right-handed alpha
Helix 6	AA6	A	28	32	Right-handed 310
Helix 7	AA7	A	82	86	Right-handed 310
Helix 8	AA8	A	124	129	Right-handed alpha
Helix 9	AA9	A	186	190	Right-handed alpha
Helix 10	AB1	B	28	32	Right-handed 310
Helix 11	AB2	B	74	76	Right-handed 310
Helix 12	AB3	B	87	91	Right-handed 310
Helix 13	AB4	B	172	174	Right-handed 310
Helix 14	AB5	B	203	205	Right-handed 310
Helix 15	AB6	B	217	220	Right-handed 310
Helix 16	AB7	C	128	132	Right-handed 310
Helix 17	AB8	C	142	146	Right-handed 310
Helix 18	AB9	C	177	189	Right-handed alpha
Helix 19	AC1	C	220	223	Right-handed 310

There are 16 sheets in PDB entry 9JD1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	260	261	first strand
Strand 2	D	398	405	anti-parallel
Strand 3	D	424	428	anti-parallel
Strand 4	D	472	476	anti-parallel
Strand 5	D	452	461	anti-parallel
Strand 6	D	444	449	anti-parallel
Strand 7	D	378	383	anti-parallel
Strand 8	D	398	405	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	270	275	first strand
Strand 2	D	278	285	anti-parallel
Strand 3	D	290	293	anti-parallel
Strand 4	D	347	351	anti-parallel
Strand 5	D	326	333	anti-parallel
Strand 6	D	308	312	anti-parallel
Strand 7	D	270	275	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	4	5	first strand
Strand 2	A	18	24	anti-parallel
Strand 3	A	73	78	anti-parallel
Strand 4	A	63	68	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	9	12	first strand
Strand 2	A	105	109	parallel
Strand 3	A	87	94	anti-parallel
Strand 4	A	35	39	anti-parallel
Strand 5	A	46	49	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	9	12	first strand
Strand 2	A	105	109	parallel
Strand 3	A	87	94	anti-parallel
Strand 4	A	99	101	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	117	121	first strand
Strand 2	A	132	142	anti-parallel
Strand 3	A	176	185	anti-parallel
Strand 4	A	162	166	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	156	157	first strand
Strand 2	A	148	153	anti-parallel
Strand 3	A	194	200	anti-parallel
Strand 4	A	208	213	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3	7	first strand
Strand 2	B	18	25	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	68	73	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	11	12	first strand
Strand 2	B	123	127	parallel
Strand 3	B	92	99	anti-parallel
Strand 4	B	33	39	anti-parallel
Strand 5	B	45	51	anti-parallel
Strand 6	B	58	60	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	101	105	first strand
Strand 2	B	110	115	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	136	140	first strand
Strand 2	B	151	161	anti-parallel
Strand 3	B	192	201	anti-parallel
Strand 4	B	179	181	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	136	140	first strand
Strand 2	B	151	161	anti-parallel
Strand 3	B	192	201	anti-parallel
Strand 4	B	185	186	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	167	170	first strand
Strand 2	B	210	216	anti-parallel
Strand 3	B	221	227	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	149	152	first strand
Strand 2	C	157	162	anti-parallel
Strand 3	C	167	170	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	196	200	first strand
Strand 2	C	236	240	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	209	212	first strand
Strand 2	C	225	228	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9JD1

Analysis of interatomic Contacts of Structural Units in PDB entry:
9JD1