Analysis of interatomic Contacts of Structural Units in PDB entry:
9JD5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9JD5 entry

There is 1 chain in PDB entry 9JD5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 41GLN 567
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 9JD5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
46 58Right-handed alpha
Helix 2
AA2
A
60 65Right-handed alpha
Helix 3
AA3
A
65 74Right-handed alpha
Helix 4
AA4
A
79 106Right-handed alpha
Helix 5
AA5
A
110 115Right-handed 310
Helix 6
AA6
A
117 120Right-handed 310
Helix 7
AA7
A
121 153Right-handed alpha
Helix 8
AA8
A
157 161Right-handed 310
Helix 9
AA9
A
173 178Right-handed alpha
Helix 10
AB1
A
193 202Right-handed alpha
Helix 11
AB2
A
217 237Right-handed alpha
Helix 12
AB3
A
245 250Right-handed alpha
Helix 13
AB4
A
251 266Right-handed alpha
Helix 14
AB5
A
269 279Right-handed alpha
Helix 15
AB6
A
281 286Right-handed 310
Helix 16
AB7
A
287 302Right-handed alpha
Helix 17
AB8
A
308 313Right-handed alpha
Helix 18
AB9
A
314 316Right-handed 310
Helix 19
AC1
A
322 356Right-handed alpha
Helix 20
AC2
A
358 362Right-handed 310
Helix 21
AC3
A
369 379Right-handed alpha
Helix 22
AC4
A
383 416Right-handed alpha
Helix 23
AC5
A
425 444Right-handed alpha
Helix 24
AC6
A
445 447Right-handed 310
Helix 25
AC7
A
450 462Right-handed alpha
Helix 26
AC8
A
465 482Right-handed alpha
Helix 27
AC9
A
484 497Right-handed alpha
Helix 28
AD1
A
502 526Right-handed alpha
Helix 29
AD2
A
539 555Right-handed alpha
Helix 30
AD3
A
555 567Right-handed alpha
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There are no sheets in PDB entry 9JD5
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il