Analysis of interatomic Contacts of Structural Units in PDB entry:
9JDB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9JDB entry

There are 2 chains in PDB entry 9JDB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 32VAL 471
B
 ASP 32VAL 471
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 9JDB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
32 44Right-handed alpha
Helix 2
AA2
A
75 79Right-handed 310
Helix 3
AA3
A
135 137Right-handed 310
Helix 4
AA4
A
138 147Right-handed alpha
Helix 5
AA5
A
156 167Right-handed alpha
Helix 6
AA6
A
170 178Right-handed alpha
Helix 7
AA7
A
179 184Right-handed 310
Helix 8
AA8
A
237 249Right-handed alpha
Helix 9
AA9
A
266 270Right-handed 310
Helix 10
AB1
A
309 314Right-handed alpha
Helix 11
AB2
A
333 351Right-handed alpha
Helix 12
AB3
A
384 392Right-handed alpha
Helix 13
AB4
A
393 395Right-handed 310
Helix 14
AB5
A
396 401Right-handed 310
Helix 15
AB6
A
404 421Right-handed alpha
Helix 16
AB7
A
422 438Right-handed alpha
Helix 17
AB8
A
441 453Right-handed alpha
Helix 18
AB9
A
456 468Right-handed alpha
Helix 19
AC1
B
33 44Right-handed alpha
Helix 20
AC2
B
75 79Right-handed 310
Helix 21
AC3
B
135 137Right-handed 310
Helix 22
AC4
B
138 147Right-handed alpha
Helix 23
AC5
B
156 167Right-handed alpha
Helix 24
AC6
B
170 178Right-handed alpha
Helix 25
AC7
B
179 184Right-handed 310
Helix 26
AC8
B
237 249Right-handed alpha
Helix 27
AC9
B
266 270Right-handed 310
Helix 28
AD1
B
309 314Right-handed alpha
Helix 29
AD2
B
333 351Right-handed alpha
Helix 30
AD3
B
384 392Right-handed alpha
Helix 31
AD4
B
393 395Right-handed 310
Helix 32
AD5
B
396 401Right-handed 310
Helix 33
AD6
B
403 421Right-handed alpha
Helix 34
AD7
B
422 438Right-handed alpha
Helix 35
AD8
B
441 453Right-handed alpha
Helix 36
AD9
B
456 468Right-handed alpha
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There are 2 sheets in PDB entry 9JDB. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 11 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
328 330first strand
Strand 2
A
198 201anti-parallel
Strand 3
A
207 216anti-parallel
Strand 4
A
254 262anti-parallel
Strand 5
A
296 305anti-parallel
Strand 6
A
56 65anti-parallel
Strand 7
A
84 92anti-parallel
Strand 8
A
109 115anti-parallel
Strand 9
A
120 126anti-parallel
Strand 10
A
192 193anti-parallel
Strand 11
A
207 216anti-parallel
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There are 11 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
328 330first strand
Strand 2
B
198 201anti-parallel
Strand 3
B
207 216anti-parallel
Strand 4
B
254 262anti-parallel
Strand 5
B
296 305anti-parallel
Strand 6
B
56 65anti-parallel
Strand 7
B
84 92anti-parallel
Strand 8
B
109 115anti-parallel
Strand 9
B
120 126anti-parallel
Strand 10
B
192 193anti-parallel
Strand 11
B
207 216anti-parallel
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