Analysis of interatomic Contacts of Structural Units in PDB entry:
9JDD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9JDD entry

There are 2 chains in PDB entry 9JDD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 424HIS 620
B
 ARG 22GLU 146
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 9JDD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
437 440Right-handed 310
Helix 2
AA2
A
447 451Right-handed 310
Helix 3
AA3
A
452 457Right-handed alpha
Helix 4
AA4
A
459 471Right-handed alpha
Helix 5
AA5
A
506 523Right-handed alpha
Helix 6
AA6
A
579 581Right-handed 310
Helix 7
AA7
B
79 81Right-handed 310
Helix 8
AA8
B
106 108Right-handed 310
Helix 9
AA9
B
133 135Right-handed 310
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There are 7 sheets in PDB entry 9JDD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
434 435first strand
Strand 2
A
546 556anti-parallel
Strand 3
A
527 535anti-parallel
Strand 4
A
605 611anti-parallel
Strand 5
A
485 486anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
434 435first strand
Strand 2
A
546 556anti-parallel
Strand 3
A
559 565anti-parallel
Strand 4
A
585 588anti-parallel
Strand 5
A
594 597anti-parallel
Strand 6
A
605 611anti-parallel
Strand 7
A
485 486anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
572 573first strand
Strand 2
A
576 577anti-parallel
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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
74 77first strand
Strand 2
B
63 67anti-parallel
Strand 3
B
56 60anti-parallel
Strand 4
B
27 30anti-parallel
Strand 5
B
128 131anti-parallel
Strand 6
B
110 117anti-parallel
Strand 7
B
97 105anti-parallel
Strand 8
B
91 94anti-parallel
Strand 9
B
82 85anti-parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
74 77first strand
Strand 2
B
63 67anti-parallel
Strand 3
B
56 60anti-parallel
Strand 4
B
27 30anti-parallel
Strand 5
B
128 131anti-parallel
Strand 6
B
110 117anti-parallel
Strand 7
B
123 125anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
32 34first strand
Strand 2
B
37 45anti-parallel
Strand 3
B
48 54anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
32 34first strand
Strand 2
B
37 45anti-parallel
Strand 3
B
139 141parallel
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