Analysis of interatomic Contacts of Structural Units in PDB entry:
9JDH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9JDH entry

There is 1 chain in PDB entry 9JDH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 3TYR 385
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 5 helices in PDB entry 9JDH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
53 63Right-handed 310
Helix 2
AA2
A
66 71Right-handed alpha
Helix 3
AA3
A
88 92Right-handed 310
Helix 4
AA4
A
208 212Right-handed 310
Helix 5
AA5
A
336 346Right-handed alpha
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There are 8 sheets in PDB entry 9JDH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
7 12first strand
Strand 2
A
30 35parallel
Strand 3
A
85 86anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
20 24first strand
Strand 2
A
107 117parallel
Strand 3
A
94 103anti-parallel
Strand 4
A
42 50anti-parallel
Strand 5
A
73 80anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
124 130first strand
Strand 2
A
150 156anti-parallel
Strand 3
A
200 203anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
142 145first strand
Strand 2
A
242 248parallel
Strand 3
A
215 221anti-parallel
Strand 4
A
170 176anti-parallel
Strand 5
A
183 190anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
192 193first strand
Strand 2
A
196 197anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
256 263first strand
Strand 2
A
285 293anti-parallel
Strand 3
A
329 335anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
279 280first strand
Strand 2
A
380 383parallel
Strand 3
A
355 364anti-parallel
Strand 4
A
299 307anti-parallel
Strand 5
A
323 324anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
313 318first strand
Strand 2
A
299 307anti-parallel
Strand 3
A
355 364anti-parallel
Strand 4
A
372 373anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il