Analysis of interatomic Contacts of Structural Units in PDB entry:
9JDI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9JDI entry

There are 2 chains in PDB entry 9JDI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 252GLN 608
C
 LYS 23GLY 186
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 9JDI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
275 279Right-handed 310
Helix 2
AA2
A
292 304Right-handed alpha
Helix 3
AA3
A
335 348Right-handed alpha
Helix 4
AA4
A
354 356Right-handed 310
Helix 5
AA5
A
357 362Right-handed alpha
Helix 6
AA6
A
368 373Right-handed 310
Helix 7
AA7
A
380 396Right-handed alpha
Helix 8
AA8
A
400 417Right-handed alpha
Helix 9
AA9
A
424 433Right-handed alpha
Helix 10
AB1
A
434 455Right-handed alpha
Helix 11
AB2
A
458 463Right-handed 310
Helix 12
AB3
A
475 485Right-handed alpha
Helix 13
AB4
A
562 568Right-handed alpha
Helix 14
AB5
A
571 573Right-handed 310
Helix 15
AB6
A
574 587Right-handed alpha
Helix 16
AB7
C
58 73Right-handed alpha
Helix 17
AB8
C
73 82Right-handed alpha
Helix 18
AB9
C
97 106Right-handed alpha
Helix 19
AC1
C
112 116Right-handed alpha
Helix 20
AC2
C
167 173Right-handed alpha
Helix 21
AC3
C
175 186Right-handed alpha
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There are 4 sheets in PDB entry 9JDI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
257 262first strand
Strand 2
A
532 543anti-parallel
Strand 3
A
546 559anti-parallel
Strand 4
A
593 606anti-parallel
Strand 5
A
421 422parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
498 500first strand
Strand 2
A
527 529anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
25 29first strand
Strand 2
C
44 53anti-parallel
Strand 3
C
37 38anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
25 29first strand
Strand 2
C
44 53anti-parallel
Strand 3
C
86 95parallel
Strand 4
C
117 126anti-parallel
Strand 5
C
129 143anti-parallel
Strand 6
C
153 162anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il