Analysis of interatomic Contacts of Structural Units in PDB entry:
9JDJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9JDJ entry

There are 2 chains in PDB entry 9JDJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 57ARG 587
B
 GLY 57ARG 587
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 58 helices in PDB entry 9JDJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
60 65Right-handed alpha
Helix 2
AA2
A
65 74Right-handed alpha
Helix 3
AA3
A
76 78Right-handed 310
Helix 4
AA4
A
79 90Right-handed alpha
Helix 5
AA5
A
90 106Right-handed alpha
Helix 6
AA6
A
108 117Right-handed alpha
Helix 7
AA7
A
121 152Right-handed alpha
Helix 8
AA8
A
173 180Right-handed alpha
Helix 9
AA9
A
193 202Right-handed alpha
Helix 10
AB1
A
217 237Right-handed alpha
Helix 11
AB2
A
245 267Right-handed alpha
Helix 12
AB3
A
269 279Right-handed alpha
Helix 13
AB4
A
281 287Right-handed alpha
Helix 14
AB5
A
287 302Right-handed alpha
Helix 15
AB6
A
307 316Right-handed alpha
Helix 16
AB7
A
321 356Right-handed alpha
Helix 17
AB8
A
358 363Right-handed alpha
Helix 18
AB9
A
373 381Right-handed alpha
Helix 19
AC1
A
383 418Right-handed alpha
Helix 20
AC2
A
425 444Right-handed alpha
Helix 21
AC3
A
445 449Right-handed 310
Helix 22
AC4
A
450 462Right-handed alpha
Helix 23
AC5
A
465 481Right-handed alpha
Helix 24
AC6
A
484 496Right-handed alpha
Helix 25
AC7
A
504 510Right-handed alpha
Helix 26
AC8
A
510 526Right-handed alpha
Helix 27
AC9
A
539 555Right-handed alpha
Helix 28
AD1
A
555 568Right-handed alpha
Helix 29
AD2
A
571 581Right-handed alpha
Helix 30
AD3
B
60 65Right-handed alpha
Helix 31
AD4
B
65 74Right-handed alpha
Helix 32
AD5
B
76 78Right-handed 310
Helix 33
AD6
B
79 90Right-handed alpha
Helix 34
AD7
B
90 106Right-handed alpha
Helix 35
AD8
B
108 117Right-handed alpha
Helix 36
AD9
B
121 152Right-handed alpha
Helix 37
AE1
B
173 180Right-handed alpha
Helix 38
AE2
B
193 201Right-handed alpha
Helix 39
AE3
B
217 237Right-handed alpha
Helix 40
AE4
B
245 267Right-handed alpha
Helix 41
AE5
B
269 279Right-handed alpha
Helix 42
AE6
B
281 287Right-handed alpha
Helix 43
AE7
B
287 302Right-handed alpha
Helix 44
AE8
B
307 316Right-handed alpha
Helix 45
AE9
B
321 356Right-handed alpha
Helix 46
AF1
B
358 363Right-handed alpha
Helix 47
AF2
B
373 379Right-handed alpha
Helix 48
AF3
B
383 418Right-handed alpha
Helix 49
AF4
B
425 444Right-handed alpha
Helix 50
AF5
B
445 449Right-handed 310
Helix 51
AF6
B
450 462Right-handed alpha
Helix 52
AF7
B
465 481Right-handed alpha
Helix 53
AF8
B
484 496Right-handed alpha
Helix 54
AF9
B
504 510Right-handed alpha
Helix 55
AG1
B
510 526Right-handed alpha
Helix 56
AG2
B
539 555Right-handed alpha
Helix 57
AG3
B
555 568Right-handed alpha
Helix 58
AG4
B
571 581Right-handed alpha
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There are 2 sheets in PDB entry 9JDJ. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
531 532first strand
Strand 2
A
536 537anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
531 532first strand
Strand 2
B
536 537anti-parallel
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