Analysis of interatomic Contacts of Structural Units in PDB entry:
9JDM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9JDM entry

There are 4 chains in PDB entry 9JDM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 119PRO 755
D
 LEU 119PRO 755
B
 LEU 119PRO 755
C
 LEU 119PRO 755
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are112 helices in PDB entry 9JDM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
119 127Right-handed alpha
Helix 2
AA2
A
133 146Right-handed alpha
Helix 3
AA3
A
170 178Right-handed alpha
Helix 4
AA4
A
182 197Right-handed alpha
Helix 5
AA5
A
200 205Right-handed alpha
Helix 6
AA6
A
217 225Right-handed alpha
Helix 7
AA7
A
227 237Right-handed alpha
Helix 8
AA8
A
264 272Right-handed alpha
Helix 9
AA9
A
274 283Right-handed alpha
Helix 10
AB1
A
298 306Right-handed alpha
Helix 11
AB2
A
315 329Right-handed alpha
Helix 12
AB3
A
343 352Right-handed alpha
Helix 13
AB4
A
353 362Right-handed alpha
Helix 14
AB5
A
402 410Right-handed alpha
Helix 15
AB6
A
415 420Right-handed alpha
Helix 16
AB7
A
422 436Right-handed alpha
Helix 17
AB8
A
436 461Right-handed alpha
Helix 18
AB9
A
483 507Right-handed alpha
Helix 19
AC1
A
520 542Right-handed alpha
Helix 20
AC2
A
547 562Right-handed alpha
Helix 21
AC3
A
563 568Right-handed 310
Helix 22
AC4
A
569 586Right-handed alpha
Helix 23
AC5
A
586 606Right-handed alpha
Helix 24
AC6
A
607 609Right-handed 310
Helix 25
AC7
A
624 637Right-handed alpha
Helix 26
AC8
A
650 667Right-handed alpha
Helix 27
AC9
A
668 687Right-handed alpha
Helix 28
AD1
A
690 707Right-handed alpha
Helix 29
AD2
D
120 127Right-handed alpha
Helix 30
AD3
D
133 146Right-handed alpha
Helix 31
AD4
D
170 178Right-handed alpha
Helix 32
AD5
D
182 197Right-handed alpha
Helix 33
AD6
D
200 205Right-handed alpha
Helix 34
AD7
D
217 225Right-handed alpha
Helix 35
AD8
D
227 237Right-handed alpha
Helix 36
AD9
D
264 272Right-handed alpha
Helix 37
AE1
D
274 283Right-handed alpha
Helix 38
AE2
D
298 306Right-handed alpha
Helix 39
AE3
D
315 329Right-handed alpha
Helix 40
AE4
D
343 352Right-handed alpha
Helix 41
AE5
D
353 362Right-handed alpha
Helix 42
AE6
D
402 410Right-handed alpha
Helix 43
AE7
D
415 420Right-handed alpha
Helix 44
AE8
D
422 436Right-handed alpha
Helix 45
AE9
D
436 461Right-handed alpha
Helix 46
AF1
D
483 507Right-handed alpha
Helix 47
AF2
D
520 542Right-handed alpha
Helix 48
AF3
D
547 562Right-handed alpha
Helix 49
AF4
D
563 568Right-handed 310
Helix 50
AF5
D
569 586Right-handed alpha
Helix 51
AF6
D
586 606Right-handed alpha
Helix 52
AF7
D
607 609Right-handed 310
Helix 53
AF8
D
624 637Right-handed alpha
Helix 54
AF9
D
650 667Right-handed alpha
Helix 55
AG1
D
668 687Right-handed alpha
Helix 56
AG2
D
690 707Right-handed alpha
Helix 57
AG3
B
120 127Right-handed alpha
Helix 58
AG4
B
133 146Right-handed alpha
Helix 59
AG5
B
170 178Right-handed alpha
Helix 60
AG6
B
182 197Right-handed alpha
Helix 61
AG7
B
200 205Right-handed alpha
Helix 62
AG8
B
217 225Right-handed alpha
Helix 63
AG9
B
227 237Right-handed alpha
Helix 64
AH1
B
264 272Right-handed alpha
Helix 65
AH2
B
274 283Right-handed alpha
Helix 66
AH3
B
298 306Right-handed alpha
Helix 67
AH4
B
315 329Right-handed alpha
Helix 68
AH5
B
343 352Right-handed alpha
Helix 69
AH6
B
353 362Right-handed alpha
Helix 70
AH7
B
402 410Right-handed alpha
Helix 71
AH8
B
415 420Right-handed alpha
Helix 72
AH9
B
422 436Right-handed alpha
Helix 73
AI1
B
436 461Right-handed alpha
Helix 74
AI2
B
483 507Right-handed alpha
Helix 75
AI3
B
520 542Right-handed alpha
Helix 76
AI4
B
547 562Right-handed alpha
Helix 77
AI5
B
563 568Right-handed 310
Helix 78
AI6
B
569 586Right-handed alpha
Helix 79
AI7
B
586 606Right-handed alpha
Helix 80
AI8
B
607 609Right-handed 310
Helix 81
AI9
B
624 637Right-handed alpha
Helix 82
AJ1
B
650 667Right-handed alpha
Helix 83
AJ2
B
668 687Right-handed alpha
Helix 84
AJ3
B
690 707Right-handed alpha
Helix 85
AJ4
C
120 127Right-handed alpha
Helix 86
AJ5
C
133 146Right-handed alpha
Helix 87
AJ6
C
170 178Right-handed alpha
Helix 88
AJ7
C
182 197Right-handed alpha
Helix 89
AJ8
C
200 205Right-handed alpha
Helix 90
AJ9
C
217 225Right-handed alpha
Helix 91
AK1
C
227 237Right-handed alpha
Helix 92
AK2
C
264 272Right-handed alpha
Helix 93
AK3
C
274 283Right-handed alpha
Helix 94
AK4
C
298 306Right-handed alpha
Helix 95
AK5
C
315 329Right-handed alpha
Helix 96
AK6
C
343 352Right-handed alpha
Helix 97
AK7
C
353 362Right-handed alpha
Helix 98
AK8
C
402 410Right-handed alpha
Helix 99
AK9
C
415 420Right-handed alpha
Helix 100
AL1
C
422 436Right-handed alpha
Helix 101
AL2
C
436 461Right-handed alpha
Helix 102
AL3
C
483 507Right-handed alpha
Helix 103
AL4
C
520 542Right-handed alpha
Helix 104
AL5
C
547 562Right-handed alpha
Helix 105
AL6
C
563 568Right-handed 310
Helix 106
AL7
C
569 586Right-handed alpha
Helix 107
AL8
C
586 606Right-handed alpha
Helix 108
AL9
C
607 609Right-handed 310
Helix 109
AM1
C
624 637Right-handed alpha
Helix 110
AM2
C
650 667Right-handed alpha
Helix 111
AM3
C
668 687Right-handed alpha
Helix 112
AM4
C
690 707Right-handed alpha
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There are 4 sheets in PDB entry 9JDM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
376 382first strand
Strand 2
A
385 390anti-parallel
Strand 3
A
733 737anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
376 382first strand
Strand 2
D
385 390anti-parallel
Strand 3
D
733 737anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
376 382first strand
Strand 2
B
385 390anti-parallel
Strand 3
B
733 737anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
376 382first strand
Strand 2
C
385 390anti-parallel
Strand 3
C
733 737anti-parallel
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