Analysis of interatomic Contacts of Structural Units in PDB entry:
9JDO

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9JDO entry

Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There is 1 chain in PDB entry 9JDO (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 26	GLY 198

There are 5 helices in PDB entry 9JDO. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	32	36	Right-handed 310
Helix 2	AA2	A	43	48	Right-handed alpha
Helix 3	AA3	A	116	120	Right-handed 310
Helix 4	AA4	A	165	179	Right-handed alpha
Helix 5	AA5	A	182	184	Right-handed 310

There is 1 sheet (AA1) in PDB entry 9JDO.

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	186	187	first strand
Strand 2	A	49	58	anti-parallel
Strand 3	A	150	159	anti-parallel
Strand 4	A	138	147	anti-parallel
Strand 5	A	125	133	anti-parallel
Strand 6	A	111	114	anti-parallel
Strand 7	A	95	105	anti-parallel
Strand 8	A	84	92	anti-parallel
Strand 9	A	73	78	anti-parallel
Strand 10	A	49	58	anti-parallel

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9JDO

Analysis of interatomic Contacts of Structural Units in PDB entry:
9JDO