Analysis of interatomic Contacts of Structural Units in PDB entry:
9JDQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9JDQ entry

There are 2 chains in PDB entry 9JDQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLY 249
B
 MET 1GLY 249
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 9JDQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
11 24Right-handed alpha
Helix 2
AA2
A
34 49Right-handed alpha
Helix 3
AA3
A
63 73Right-handed alpha
Helix 4
AA4
A
93 97Right-handed 310
Helix 5
AA5
A
98 110Right-handed alpha
Helix 6
AA6
A
110 125Right-handed alpha
Helix 7
AA7
A
137 140Right-handed 310
Helix 8
AA8
A
147 171Right-handed alpha
Helix 9
AA9
A
188 195Right-handed alpha
Helix 10
AB1
A
200 204Right-handed 310
Helix 11
AB2
A
211 224Right-handed alpha
Helix 12
AB3
B
11 24Right-handed alpha
Helix 13
AB4
B
34 49Right-handed alpha
Helix 14
AB5
B
63 73Right-handed alpha
Helix 15
AB6
B
93 97Right-handed 310
Helix 16
AB7
B
98 110Right-handed alpha
Helix 17
AB8
B
110 125Right-handed alpha
Helix 18
AB9
B
137 140Right-handed 310
Helix 19
AC1
B
147 171Right-handed alpha
Helix 20
AC2
B
188 195Right-handed alpha
Helix 21
AC3
B
211 224Right-handed alpha
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There are 6 sheets in PDB entry 9JDQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
54 58first strand
Strand 2
A
27 32parallel
Strand 3
A
2 7parallel
Strand 4
A
78 84parallel
Strand 5
A
131 135parallel
Strand 6
A
176 181parallel
Strand 7
A
228 231parallel
Strand 8
A
238 241anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
142 143first strand
Strand 2
B
246 247parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
185 186first strand
Strand 2
A
209 210parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
246 247first strand
Strand 2
B
142 143parallel
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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
54 58first strand
Strand 2
B
27 32parallel
Strand 3
B
2 7parallel
Strand 4
B
78 84parallel
Strand 5
B
131 135parallel
Strand 6
B
176 181parallel
Strand 7
B
228 231parallel
Strand 8
B
238 241anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
185 186first strand
Strand 2
B
209 210parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il