Analysis of interatomic Contacts of Structural Units in PDB entry:
9JDS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9JDS entry

There is 1 chain in PDB entry 9JDS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 39PRO 469
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 31 helices in PDB entry 9JDS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
47 57Right-handed alpha
Helix 2
AA2
A
62 65Right-handed 310
Helix 3
AA3
A
66 75Right-handed alpha
Helix 4
AA4
A
76 89Right-handed alpha
Helix 5
AA5
A
89 107Right-handed alpha
Helix 6
AA6
A
121 129Right-handed alpha
Helix 7
AA7
A
133 147Right-handed alpha
Helix 8
AA8
A
151 155Right-handed 310
Helix 9
AA9
A
160 164Right-handed 310
Helix 10
AB1
A
171 181Right-handed alpha
Helix 11
AB2
A
181 187Right-handed alpha
Helix 12
AB3
A
194 199Right-handed alpha
Helix 13
AB4
A
204 209Right-handed alpha
Helix 14
AB5
A
212 217Right-handed alpha
Helix 15
AB6
A
231 236Right-handed alpha
Helix 16
AB7
A
240 246Right-handed alpha
Helix 17
AB8
A
251 258Right-handed alpha
Helix 18
AB9
A
261 263Right-handed 310
Helix 19
AC1
A
264 292Right-handed alpha
Helix 20
AC2
A
293 296Right-handed 310
Helix 21
AC3
A
300 304Right-handed 310
Helix 22
AC4
A
308 315Right-handed alpha
Helix 23
AC5
A
316 329Right-handed alpha
Helix 24
AC6
A
332 337Right-handed alpha
Helix 25
AC7
A
350 356Right-handed alpha
Helix 26
AC8
A
356 366Right-handed alpha
Helix 27
AC9
A
376 384Right-handed alpha
Helix 28
AD1
A
384 390Right-handed alpha
Helix 29
AD2
A
391 396Right-handed alpha
Helix 30
AD3
A
420 436Right-handed alpha
Helix 31
AD4
A
441 453Right-handed alpha
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There are no sheets in PDB entry 9JDS
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