Analysis of interatomic Contacts of Structural Units in PDB entry:
9JDT

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9JDT entry

There are 16 chains in PDB entry 9JDT (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 11	VAL 266
B	ILE 10	VAL 266
C	ASN 13	VAL 266
D	ALA 11	VAL 266
E	LEU 12	VAL 266
F	LEU 12	VAL 266
G	LEU 12	VAL 266
H	ALA 11	VAL 266
I	ILE 10	VAL 266
J	ALA 11	VAL 266
K	ALA 11	VAL 266
L	ALA 11	VAL 266
M	LEU 12	VAL 266
N	ALA 11	VAL 266
O	LEU 12	VAL 266
P	LEU 12	VAL 266

There are190 helices in PDB entry 9JDT. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	24	38	Right-handed alpha
Helix 2	AA2	A	65	79	Right-handed alpha
Helix 3	AA3	A	102	114	Right-handed alpha
Helix 4	AA4	A	114	124	Right-handed alpha
Helix 5	AA5	A	124	130	Right-handed alpha
Helix 6	AA6	A	130	135	Right-handed alpha
Helix 7	AA7	A	146	151	Right-handed alpha
Helix 8	AA8	A	156	177	Right-handed alpha
Helix 9	AA9	A	198	210	Right-handed alpha
Helix 10	AB1	A	214	219	Right-handed alpha
Helix 11	AB2	A	219	225	Right-handed alpha
Helix 12	AB3	A	234	237	Right-handed 310
Helix 13	AB4	A	238	246	Right-handed alpha
Helix 14	AB5	B	26	36	Right-handed alpha
Helix 15	AB6	B	65	79	Right-handed alpha
Helix 16	AB7	B	102	114	Right-handed alpha
Helix 17	AB8	B	114	124	Right-handed alpha
Helix 18	AB9	B	124	134	Right-handed alpha
Helix 19	AC1	B	146	151	Right-handed alpha
Helix 20	AC2	B	156	180	Right-handed alpha
Helix 21	AC3	B	196	208	Right-handed alpha
Helix 22	AC4	B	214	225	Right-handed alpha
Helix 23	AC5	B	233	245	Right-handed alpha
Helix 24	AC6	B	246	250	Right-handed 310
Helix 25	AC7	C	26	35	Right-handed alpha
Helix 26	AC8	C	67	69	Right-handed 310
Helix 27	AC9	C	70	80	Right-handed alpha
Helix 28	AD1	C	97	101	Right-handed 310
Helix 29	AD2	C	102	114	Right-handed alpha
Helix 30	AD3	C	114	132	Right-handed alpha
Helix 31	AD4	C	146	150	Right-handed 310
Helix 32	AD5	C	156	180	Right-handed alpha
Helix 33	AD6	C	196	209	Right-handed alpha
Helix 34	AD7	C	214	225	Right-handed alpha
Helix 35	AD8	C	233	236	Right-handed 310
Helix 36	AD9	C	237	245	Right-handed alpha
Helix 37	AE1	C	246	252	Right-handed 310
Helix 38	AE2	D	24	36	Right-handed alpha
Helix 39	AE3	D	65	79	Right-handed alpha
Helix 40	AE4	D	97	101	Right-handed 310
Helix 41	AE5	D	102	112	Right-handed alpha
Helix 42	AE6	D	115	123	Right-handed alpha
Helix 43	AE7	D	124	132	Right-handed alpha
Helix 44	AE8	D	146	150	Right-handed 310
Helix 45	AE9	D	156	163	Right-handed alpha
Helix 46	AF1	D	163	179	Right-handed alpha
Helix 47	AF2	D	200	203	Right-handed 310
Helix 48	AF3	D	204	209	Right-handed alpha
Helix 49	AF4	D	215	226	Right-handed alpha
Helix 50	AF5	D	235	246	Right-handed alpha
Helix 51	AF6	D	247	250	Right-handed 310
Helix 52	AF7	E	24	36	Right-handed alpha
Helix 53	AF8	E	65	80	Right-handed alpha
Helix 54	AF9	E	97	101	Right-handed 310
Helix 55	AG1	E	102	114	Right-handed alpha
Helix 56	AG2	E	117	124	Right-handed alpha
Helix 57	AG3	E	124	134	Right-handed alpha
Helix 58	AG4	E	156	180	Right-handed alpha
Helix 59	AG5	E	196	201	Right-handed alpha
Helix 60	AG6	E	202	208	Right-handed alpha
Helix 61	AG7	E	214	219	Right-handed alpha
Helix 62	AG8	E	238	246	Right-handed alpha
Helix 63	AG9	E	247	250	Right-handed 310
Helix 64	AH1	F	24	38	Right-handed alpha
Helix 65	AH2	F	65	78	Right-handed alpha
Helix 66	AH3	F	97	101	Right-handed 310
Helix 67	AH4	F	102	114	Right-handed alpha
Helix 68	AH5	F	114	135	Right-handed alpha
Helix 69	AH6	F	146	151	Right-handed alpha
Helix 70	AH7	F	158	178	Right-handed alpha
Helix 71	AH8	F	196	201	Right-handed alpha
Helix 72	AH9	F	202	210	Right-handed alpha
Helix 73	AI1	F	222	226	Right-handed 310
Helix 74	AI2	F	233	236	Right-handed 310
Helix 75	AI3	F	237	246	Right-handed alpha
Helix 76	AI4	G	26	33	Right-handed alpha
Helix 77	AI5	G	65	69	Right-handed 310
Helix 78	AI6	G	72	80	Right-handed alpha
Helix 79	AI7	G	103	108	Right-handed alpha
Helix 80	AI8	G	108	113	Right-handed alpha
Helix 81	AI9	G	114	135	Right-handed alpha
Helix 82	AJ1	G	146	150	Right-handed 310
Helix 83	AJ2	G	156	180	Right-handed alpha
Helix 84	AJ3	G	201	209	Right-handed alpha
Helix 85	AJ4	G	214	225	Right-handed alpha
Helix 86	AJ5	G	237	246	Right-handed alpha
Helix 87	AJ6	H	26	31	Right-handed alpha
Helix 88	AJ7	H	31	36	Right-handed alpha
Helix 89	AJ8	H	65	80	Right-handed alpha
Helix 90	AJ9	H	102	113	Right-handed alpha
Helix 91	AK1	H	114	123	Right-handed alpha
Helix 92	AK2	H	126	131	Right-handed alpha
Helix 93	AK3	H	157	180	Right-handed alpha
Helix 94	AK4	H	196	201	Right-handed alpha
Helix 95	AK5	H	201	209	Right-handed alpha
Helix 96	AK6	H	216	225	Right-handed alpha
Helix 97	AK7	H	233	236	Right-handed 310
Helix 98	AK8	H	237	246	Right-handed alpha
Helix 99	AK9	H	262	266	Right-handed 310
Helix 100	AL1	I	24	37	Right-handed alpha
Helix 101	AL2	I	65	79	Right-handed alpha
Helix 102	AL3	I	102	114	Right-handed alpha
Helix 103	AL4	I	114	132	Right-handed alpha
Helix 104	AL5	I	146	150	Right-handed 310
Helix 105	AL6	I	156	180	Right-handed alpha
Helix 106	AL7	I	202	208	Right-handed alpha
Helix 107	AL8	I	233	246	Right-handed alpha
Helix 108	AL9	J	26	36	Right-handed alpha
Helix 109	AM1	J	65	80	Right-handed alpha
Helix 110	AM2	J	97	101	Right-handed 310
Helix 111	AM3	J	102	114	Right-handed alpha
Helix 112	AM4	J	114	124	Right-handed alpha
Helix 113	AM5	J	124	132	Right-handed alpha
Helix 114	AM6	J	146	151	Right-handed alpha
Helix 115	AM7	J	159	181	Right-handed alpha
Helix 116	AM8	J	196	201	Right-handed alpha
Helix 117	AM9	J	203	209	Right-handed alpha
Helix 118	AN1	J	216	225	Right-handed alpha
Helix 119	AN2	J	237	246	Right-handed alpha
Helix 120	AN3	J	247	250	Right-handed 310
Helix 121	AN4	K	24	36	Right-handed alpha
Helix 122	AN5	K	65	80	Right-handed alpha
Helix 123	AN6	K	97	101	Right-handed 310
Helix 124	AN7	K	102	114	Right-handed alpha
Helix 125	AN8	K	114	132	Right-handed alpha
Helix 126	AN9	K	146	150	Right-handed 310
Helix 127	AO1	K	156	170	Right-handed alpha
Helix 128	AO2	K	172	178	Right-handed alpha
Helix 129	AO3	K	198	209	Right-handed alpha
Helix 130	AO4	K	218	226	Right-handed alpha
Helix 131	AO5	K	233	236	Right-handed 310
Helix 132	AO6	K	237	246	Right-handed alpha
Helix 133	AO7	L	24	37	Right-handed alpha
Helix 134	AO8	L	66	80	Right-handed alpha
Helix 135	AO9	L	103	113	Right-handed alpha
Helix 136	AP1	L	114	124	Right-handed alpha
Helix 137	AP2	L	124	133	Right-handed alpha
Helix 138	AP3	L	156	180	Right-handed alpha
Helix 139	AP4	L	196	203	Right-handed alpha
Helix 140	AP5	L	203	208	Right-handed alpha
Helix 141	AP6	L	233	246	Right-handed alpha
Helix 142	AP7	M	27	34	Right-handed alpha
Helix 143	AP8	M	65	80	Right-handed alpha
Helix 144	AP9	M	102	112	Right-handed alpha
Helix 145	AQ1	M	114	129	Right-handed alpha
Helix 146	AQ2	M	129	134	Right-handed alpha
Helix 147	AQ3	M	146	151	Right-handed alpha
Helix 148	AQ4	M	156	180	Right-handed alpha
Helix 149	AQ5	M	196	209	Right-handed alpha
Helix 150	AQ6	M	217	225	Right-handed alpha
Helix 151	AQ7	M	233	236	Right-handed 310
Helix 152	AQ8	M	237	244	Right-handed alpha
Helix 153	AQ9	M	245	250	Right-handed 310
Helix 154	AR1	N	24	35	Right-handed alpha
Helix 155	AR2	N	65	76	Right-handed alpha
Helix 156	AR3	N	97	101	Right-handed 310
Helix 157	AR4	N	102	114	Right-handed alpha
Helix 158	AR5	N	114	132	Right-handed alpha
Helix 159	AR6	N	156	178	Right-handed alpha
Helix 160	AR7	N	196	201	Right-handed alpha
Helix 161	AR8	N	204	209	Right-handed alpha
Helix 162	AR9	N	215	225	Right-handed alpha
Helix 163	AS1	N	233	236	Right-handed 310
Helix 164	AS2	N	237	242	Right-handed alpha
Helix 165	AS3	N	247	252	Right-handed 310
Helix 166	AS4	O	24	37	Right-handed alpha
Helix 167	AS5	O	65	80	Right-handed alpha
Helix 168	AS6	O	102	114	Right-handed alpha
Helix 169	AS7	O	114	121	Right-handed alpha
Helix 170	AS8	O	124	131	Right-handed alpha
Helix 171	AS9	O	146	150	Right-handed 310
Helix 172	AT1	O	156	181	Right-handed alpha
Helix 173	AT2	O	196	210	Right-handed alpha
Helix 174	AT3	O	219	224	Right-handed alpha
Helix 175	AT4	O	233	237	Right-handed 310
Helix 176	AT5	O	238	246	Right-handed alpha
Helix 177	AT6	O	247	250	Right-handed 310
Helix 178	AT7	P	26	36	Right-handed alpha
Helix 179	AT8	P	65	71	Right-handed alpha
Helix 180	AT9	P	73	78	Right-handed alpha
Helix 181	AU1	P	102	112	Right-handed alpha
Helix 182	AU2	P	114	124	Right-handed alpha
Helix 183	AU3	P	124	135	Right-handed alpha
Helix 184	AU4	P	146	151	Right-handed alpha
Helix 185	AU5	P	156	180	Right-handed alpha
Helix 186	AU6	P	196	202	Right-handed 310
Helix 187	AU7	P	203	209	Right-handed alpha
Helix 188	AU8	P	214	224	Right-handed alpha
Helix 189	AU9	P	234	246	Right-handed alpha
Helix 190	AV1	P	247	250	Right-handed 310

There are 28 sheets in PDB entry 9JDT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	17	19	first strand
Strand 2	A	85	87	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	43	45	first strand
Strand 2	A	58	60	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	140	144	first strand
Strand 2	A	185	191	parallel
Strand 3	A	256	259	parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	55	60	first strand
Strand 2	B	40	45	parallel
Strand 3	B	16	20	parallel
Strand 4	B	85	88	parallel
Strand 5	B	139	144	parallel
Strand 6	B	184	191	parallel
Strand 7	B	256	259	parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	40	43	first strand
Strand 2	C	16	19	parallel
Strand 3	C	85	88	parallel
Strand 4	C	139	143	parallel
Strand 5	C	184	186	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	188	190	first strand
Strand 2	C	256	258	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	17	18	first strand
Strand 2	D	85	86	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	42	45	first strand
Strand 2	D	57	60	parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	139	144	first strand
Strand 2	D	184	191	parallel
Strand 3	D	256	259	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	42	45	first strand
Strand 2	E	57	60	parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	85	88	first strand
Strand 2	E	140	144	parallel
Strand 3	E	186	190	parallel
Strand 4	E	256	258	parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	40	43	first strand
Strand 2	F	16	19	parallel
Strand 3	F	85	87	parallel
Strand 4	F	140	144	parallel
Strand 5	F	187	191	parallel
Strand 6	F	255	259	parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	16	19	first strand
Strand 2	G	40	45	parallel
Strand 3	G	58	60	parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	86	87	first strand
Strand 2	G	139	144	parallel
Strand 3	G	184	189	parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	55	58	first strand
Strand 2	H	40	44	parallel
Strand 3	H	16	20	parallel
Strand 4	H	85	87	parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	139	144	first strand
Strand 2	H	184	191	parallel
Strand 3	H	256	259	parallel

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There are 7 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	57	60	first strand
Strand 2	I	40	45	parallel
Strand 3	I	16	20	parallel
Strand 4	I	85	88	parallel
Strand 5	I	139	144	parallel
Strand 6	I	184	191	parallel
Strand 7	I	256	259	parallel

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There are 7 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	57	60	first strand
Strand 2	J	40	45	parallel
Strand 3	J	16	19	parallel
Strand 4	J	85	88	parallel
Strand 5	J	139	144	parallel
Strand 6	J	184	191	parallel
Strand 7	J	256	259	parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	16	19	first strand
Strand 2	K	40	43	parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	85	88	first strand
Strand 2	K	139	143	parallel
Strand 3	K	184	191	parallel
Strand 4	K	256	259	parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	40	41	first strand
Strand 2	L	16	20	parallel
Strand 3	L	85	88	parallel
Strand 4	L	139	144	parallel
Strand 5	L	184	185	parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	40	41	first strand
Strand 2	L	16	20	parallel
Strand 3	L	85	88	parallel
Strand 4	L	139	144	parallel
Strand 5	L	188	191	parallel
Strand 6	L	256	259	parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	43	45	first strand
Strand 2	L	58	60	parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	17	20	first strand
Strand 2	M	41	44	parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	85	88	first strand
Strand 2	M	140	144	parallel
Strand 3	M	187	191	parallel
Strand 4	M	256	259	parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	40	42	first strand
Strand 2	N	16	19	parallel
Strand 3	N	85	87	parallel
Strand 4	N	139	144	parallel
Strand 5	N	184	189	parallel

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There are 7 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	57	59	first strand
Strand 2	O	40	44	parallel
Strand 3	O	16	20	parallel
Strand 4	O	85	88	parallel
Strand 5	O	140	144	parallel
Strand 6	O	187	189	parallel
Strand 7	O	256	257	parallel

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There are 7 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	59	60	first strand
Strand 2	P	40	45	parallel
Strand 3	P	16	20	parallel
Strand 4	P	85	88	parallel
Strand 5	P	139	144	parallel
Strand 6	P	184	189	parallel
Strand 7	P	256	257	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9JDT

Analysis of interatomic Contacts of Structural Units in PDB entry:
9JDT