Analysis of interatomic Contacts of Structural Units in PDB entry:
9JDV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9JDV entry

There is 1 chain in PDB entry 9JDV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 21PRO 516
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 9JDV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
21 36Right-handed alpha
Helix 2
AA2
A
37 42Right-handed alpha
Helix 3
AA3
A
68 77Right-handed alpha
Helix 4
AA4
A
80 84Right-handed 310
Helix 5
AA5
A
95 99Right-handed 310
Helix 6
AA6
A
109 111Right-handed 310
Helix 7
AA7
A
130 135Right-handed alpha
Helix 8
AA8
A
138 142Right-handed 310
Helix 9
AA9
A
143 171Right-handed alpha
Helix 10
AB1
A
171 191Right-handed alpha
Helix 11
AB2
A
195 225Right-handed alpha
Helix 12
AB3
A
229 253Right-handed alpha
Helix 13
AB4
A
257 273Right-handed alpha
Helix 14
AB5
A
276 282Right-handed alpha
Helix 15
AB6
A
338 343Right-handed 310
Helix 16
AB7
A
346 368Right-handed alpha
Helix 17
AB8
A
370 375Right-handed alpha
Helix 18
AB9
A
377 403Right-handed alpha
Helix 19
AC1
A
404 426Right-handed alpha
Helix 20
AC2
A
430 460Right-handed alpha
Helix 21
AC3
A
464 465Right-handed 310
Helix 22
AC4
A
467 467Right-handed 310
Helix 23
AC5
A
468 487Right-handed alpha
Helix 24
AC6
A
488 492Right-handed 310
Helix 25
AC7
A
494 513Right-handed alpha
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There are 2 sheets in PDB entry 9JDV. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
47 49first strand
Strand 2
A
120 122anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
90 91first strand
Strand 2
A
113 114anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il