Analysis of interatomic Contacts of Structural Units in PDB entry:
9JE9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9JE9 entry

There are 2 chains in PDB entry 9JE9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 2SER 438
B
 THR 2SER 438
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 9JE9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
5 16Right-handed alpha
Helix 2
AA2
A
19 39Right-handed alpha
Helix 3
AA3
A
45 62Right-handed alpha
Helix 4
AA4
A
91 96Right-handed 310
Helix 5
AA5
A
102 111Right-handed alpha
Helix 6
AA6
A
152 161Right-handed alpha
Helix 7
AA7
A
176 183Right-handed alpha
Helix 8
AA8
A
221 233Right-handed alpha
Helix 9
AA9
A
261 279Right-handed alpha
Helix 10
AB1
A
291 307Right-handed alpha
Helix 11
AB2
A
321 343Right-handed alpha
Helix 12
AB3
A
381 383Right-handed 310
Helix 13
AB4
A
384 392Right-handed alpha
Helix 14
AB5
A
421 437Right-handed alpha
Helix 15
AB6
B
5 16Right-handed alpha
Helix 16
AB7
B
19 35Right-handed alpha
Helix 17
AB8
B
45 61Right-handed alpha
Helix 18
AB9
B
92 96Right-handed 310
Helix 19
AC1
B
102 111Right-handed alpha
Helix 20
AC2
B
152 161Right-handed alpha
Helix 21
AC3
B
176 183Right-handed alpha
Helix 22
AC4
B
221 233Right-handed alpha
Helix 23
AC5
B
261 279Right-handed alpha
Helix 24
AC6
B
291 307Right-handed alpha
Helix 25
AC7
B
321 343Right-handed alpha
Helix 26
AC8
B
380 383Right-handed 310
Helix 27
AC9
B
384 392Right-handed alpha
Helix 28
AD1
B
421 438Right-handed alpha
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There are 5 sheets in PDB entry 9JE9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 11 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
43 44first strand
Strand 2
A
113 119anti-parallel
Strand 3
A
71 76parallel
Strand 4
A
166 171parallel
Strand 5
A
214 219anti-parallel
Strand 6
A
186 189anti-parallel
Strand 7
A
397 404anti-parallel
Strand 8
A
410 417anti-parallel
Strand 9
A
348 352anti-parallel
Strand 10
A
248 251parallel
Strand 11
A
281 283parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
370 373first strand
Strand 2
A
376 379anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
41 44first strand
Strand 2
B
114 119anti-parallel
Strand 3
B
72 76parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
166 171first strand
Strand 2
B
214 219anti-parallel
Strand 3
B
186 189anti-parallel
Strand 4
B
397 404anti-parallel
Strand 5
B
410 416anti-parallel
Strand 6
B
348 352anti-parallel
Strand 7
B
248 251parallel
Strand 8
B
281 283parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
372 373first strand
Strand 2
B
376 377anti-parallel
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