Analysis of interatomic Contacts of Structural Units in PDB entry:
9JEB

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9JEB entry

There are 4 chains in PDB entry 9JEB (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 1	LYS 247
B	THR 333	LYS 528
C	GLU 1	LYS 247
D	THR 333	LYS 529

There are 25 helices in PDB entry 9JEB. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	28	32	Right-handed 310
Helix 2	AA2	A	62	65	Right-handed 310
Helix 3	AA3	A	74	76	Right-handed 310
Helix 4	AA4	A	87	91	Right-handed 310
Helix 5	AA5	A	218	222	Right-handed 310
Helix 6	AA6	B	337	343	Right-handed alpha
Helix 7	AA7	B	349	353	Right-handed 310
Helix 8	AA8	B	365	371	Right-handed alpha
Helix 9	AA9	B	386	389	Right-handed 310
Helix 10	AB1	B	405	410	Right-handed 310
Helix 11	AB2	B	416	422	Right-handed alpha
Helix 12	AB3	B	438	443	Right-handed alpha
Helix 13	AB4	B	502	505	Right-handed 310
Helix 14	AB5	C	28	32	Right-handed 310
Helix 15	AB6	C	62	65	Right-handed 310
Helix 16	AB7	C	87	91	Right-handed 310
Helix 17	AB8	C	218	222	Right-handed 310
Helix 18	AB9	D	337	343	Right-handed alpha
Helix 19	AC1	D	349	353	Right-handed 310
Helix 20	AC2	D	365	370	Right-handed alpha
Helix 21	AC3	D	386	389	Right-handed 310
Helix 22	AC4	D	405	410	Right-handed 310
Helix 23	AC5	D	416	422	Right-handed alpha
Helix 24	AC6	D	438	443	Right-handed alpha
Helix 25	AC7	D	502	505	Right-handed 310

There are 20 sheets in PDB entry 9JEB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3	7	first strand
Strand 2	A	18	25	anti-parallel
Strand 3	A	78	83	anti-parallel
Strand 4	A	68	73	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	10	12	first strand
Strand 2	A	118	122	parallel
Strand 3	A	92	99	anti-parallel
Strand 4	A	34	39	anti-parallel
Strand 5	A	45	51	anti-parallel
Strand 6	A	58	60	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	10	12	first strand
Strand 2	A	118	122	parallel
Strand 3	A	92	99	anti-parallel
Strand 4	A	111	114	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	143	146	first strand
Strand 2	A	158	164	anti-parallel
Strand 3	A	209	214	anti-parallel
Strand 4	A	201	206	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	149	152	first strand
Strand 2	A	242	246	parallel
Strand 3	A	223	229	anti-parallel
Strand 4	A	172	177	anti-parallel
Strand 5	A	184	188	anti-parallel
Strand 6	A	192	193	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	149	152	first strand
Strand 2	A	242	246	parallel
Strand 3	A	223	229	anti-parallel
Strand 4	A	237	238	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	232	233	first strand
Strand 2	B	376	380	anti-parallel
Strand 3	B	431	437	anti-parallel
Strand 4	B	507	515	anti-parallel
Strand 5	B	395	403	anti-parallel
Strand 6	B	354	358	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	361	362	first strand
Strand 2	B	524	525	parallel
Strand 3	B	391	392	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	452	454	first strand
Strand 2	B	492	494	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	473	474	first strand
Strand 2	B	488	489	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3	7	first strand
Strand 2	C	18	25	anti-parallel
Strand 3	C	78	83	anti-parallel
Strand 4	C	68	73	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	12	first strand
Strand 2	C	118	122	parallel
Strand 3	C	92	99	anti-parallel
Strand 4	C	34	39	anti-parallel
Strand 5	C	45	51	anti-parallel
Strand 6	C	58	60	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	12	first strand
Strand 2	C	118	122	parallel
Strand 3	C	92	99	anti-parallel
Strand 4	C	111	114	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	143	146	first strand
Strand 2	C	158	164	anti-parallel
Strand 3	C	209	214	anti-parallel
Strand 4	C	201	206	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	149	152	first strand
Strand 2	C	242	246	parallel
Strand 3	C	223	229	anti-parallel
Strand 4	C	172	177	anti-parallel
Strand 5	C	184	188	anti-parallel
Strand 6	C	192	193	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	149	152	first strand
Strand 2	C	242	246	parallel
Strand 3	C	223	229	anti-parallel
Strand 4	C	237	238	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	232	233	first strand
Strand 2	D	376	380	anti-parallel
Strand 3	D	431	437	anti-parallel
Strand 4	D	507	514	anti-parallel
Strand 5	D	395	403	anti-parallel
Strand 6	D	354	358	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	361	362	first strand
Strand 2	D	524	525	parallel
Strand 3	D	391	392	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	452	454	first strand
Strand 2	D	492	494	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	473	474	first strand
Strand 2	D	488	489	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9JEB

Analysis of interatomic Contacts of Structural Units in PDB entry:
9JEB