Analysis of interatomic Contacts of Structural Units in PDB entry:
9JEH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9JEH entry

There are 2 chains in PDB entry 9JEH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 8PRO 349
B
 SER 8PRO 349
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 33 helices in PDB entry 9JEH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
18 20Right-handed 310
Helix 2
AA2
A
21 41Right-handed alpha
Helix 3
AA3
A
46 51Right-handed 310
Helix 4
AA4
A
58 69Right-handed alpha
Helix 5
AA5
A
72 88Right-handed alpha
Helix 6
AA6
A
89 94Right-handed alpha
Helix 7
AA7
A
108 120Right-handed alpha
Helix 8
AA8
A
125 129Right-handed 310
Helix 9
AA9
A
163 172Right-handed alpha
Helix 10
AB1
A
194 196Right-handed 310
Helix 11
AB2
A
200 211Right-handed alpha
Helix 12
AB3
A
239 247Right-handed alpha
Helix 13
AB4
A
258 284Right-handed alpha
Helix 14
AB5
A
301 305Right-handed 310
Helix 15
AB6
A
311 333Right-handed alpha
Helix 16
AB7
A
333 340Right-handed alpha
Helix 17
AB8
B
20 40Right-handed alpha
Helix 18
AB9
B
46 51Right-handed 310
Helix 19
AC1
B
58 69Right-handed alpha
Helix 20
AC2
B
72 88Right-handed alpha
Helix 21
AC3
B
89 94Right-handed alpha
Helix 22
AC4
B
108 120Right-handed alpha
Helix 23
AC5
B
125 129Right-handed 310
Helix 24
AC6
B
163 172Right-handed alpha
Helix 25
AC7
B
194 196Right-handed 310
Helix 26
AC8
B
200 211Right-handed alpha
Helix 27
AC9
B
220 222Right-handed 310
Helix 28
AD1
B
239 247Right-handed alpha
Helix 29
AD2
B
255 257Right-handed 310
Helix 30
AD3
B
258 284Right-handed alpha
Helix 31
AD4
B
286 288Right-handed 310
Helix 32
AD5
B
311 333Right-handed alpha
Helix 33
AD6
B
333 339Right-handed alpha
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There are 5 sheets in PDB entry 9JEH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
10 12first strand
Strand 2
A
224 228parallel
Strand 3
A
290 292parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
54 56first strand
Strand 2
A
133 139parallel
Strand 3
A
145 149anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
54 56first strand
Strand 2
A
133 139parallel
Strand 3
A
188 192anti-parallel
Strand 4
A
181 183anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
53 56first strand
Strand 2
B
10 15parallel
Strand 3
B
224 229parallel
Strand 4
B
290 293parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
145 149first strand
Strand 2
B
134 139anti-parallel
Strand 3
B
188 192anti-parallel
Strand 4
B
181 183anti-parallel
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