Analysis of interatomic Contacts of Structural Units in PDB entry:
9JEI

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9JEI entry

There are 3 chains in PDB entry 9JEI (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PHE 1	ALA 737
B	GLY 1	CYS 471
C	GLU 1	THR 49

There are 23 helices in PDB entry 9JEI. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	175	180	Right-handed alpha
Helix 2	AA2	A	188	194	Right-handed alpha
Helix 3	AA3	A	214	218	Right-handed 310
Helix 4	AA4	A	245	250	Right-handed alpha
Helix 5	AA5	A	366	370	Right-handed 310
Helix 6	AA6	B	3	9	Right-handed alpha
Helix 7	AA7	B	12	20	Right-handed alpha
Helix 8	AA8	B	40	47	Right-handed alpha
Helix 9	AA9	B	50	52	Right-handed 310
Helix 10	AB1	B	121	125	Right-handed 310
Helix 11	AB2	B	127	146	Right-handed alpha
Helix 12	AB3	B	169	173	Right-handed 310
Helix 13	AB4	B	175	179	Right-handed 310
Helix 14	AB5	B	199	209	Right-handed alpha
Helix 15	AB6	B	221	232	Right-handed alpha
Helix 16	AB7	B	232	237	Right-handed alpha
Helix 17	AB8	B	258	262	Right-handed 310
Helix 18	AB9	B	281	286	Right-handed 310
Helix 19	AC1	B	291	303	Right-handed alpha
Helix 20	AC2	B	314	325	Right-handed alpha
Helix 21	AC3	B	337	350	Right-handed alpha
Helix 22	AC4	B	436	441	Right-handed 310
Helix 23	AC5	C	42	46	Right-handed 310

There are 21 sheets in PDB entry 9JEI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	9	12	first strand
Strand 2	A	431	435	anti-parallel
Strand 3	A	422	426	anti-parallel
Strand 4	A	409	410	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	23	26	first strand
Strand 2	A	35	40	anti-parallel
Strand 3	A	55	60	anti-parallel
Strand 4	A	67	69	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	79	81	first strand
Strand 2	A	84	85	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	87	88	first strand
Strand 2	A	113	114	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	98	100	first strand
Strand 2	A	105	109	anti-parallel
Strand 3	A	127	131	anti-parallel
Strand 4	A	136	139	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	160	164	first strand
Strand 2	A	168	173	anti-parallel
Strand 3	A	182	187	anti-parallel
Strand 4	A	208	209	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	226	229	first strand
Strand 2	A	238	243	anti-parallel
Strand 3	A	252	256	anti-parallel
Strand 4	A	263	268	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	280	283	first strand
Strand 2	A	292	297	anti-parallel
Strand 3	A	314	320	anti-parallel
Strand 4	A	326	332	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	301	303	first strand
Strand 2	A	309	311	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	343	348	first strand
Strand 2	A	357	362	anti-parallel
Strand 3	A	372	377	anti-parallel
Strand 4	A	390	392	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	511	513	first strand
Strand 2	A	536	542	anti-parallel
Strand 3	A	472	482	anti-parallel
Strand 4	A	440	449	anti-parallel
Strand 5	A	577	578	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	453	454	first strand
Strand 2	A	585	592	parallel
Strand 3	A	555	563	anti-parallel
Strand 4	A	490	499	anti-parallel
Strand 5	A	520	528	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	606	611	first strand
Strand 2	A	623	633	anti-parallel
Strand 3	A	691	701	anti-parallel
Strand 4	A	652	656	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	616	618	first strand
Strand 2	A	733	737	parallel
Strand 3	A	711	712	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	668	671	first strand
Strand 2	A	678	684	anti-parallel
Strand 3	A	641	645	anti-parallel
Strand 4	A	715	718	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	38	39	first strand
Strand 2	B	24	26	anti-parallel
Strand 3	B	54	55	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	60	65	first strand
Strand 2	B	87	92	anti-parallel
Strand 3	B	425	431	parallel
Strand 4	B	415	418	anti-parallel
Strand 5	B	353	360	anti-parallel
Strand 6	B	385	389	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	83	84	first strand
Strand 2	B	96	106	anti-parallel
Strand 3	B	393	403	anti-parallel
Strand 4	B	366	373	anti-parallel
Strand 5	B	379	381	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	194	197	first strand
Strand 2	B	149	156	anti-parallel
Strand 3	B	112	119	parallel
Strand 4	B	243	250	parallel
Strand 5	B	304	310	parallel
Strand 6	B	329	332	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	455	456	first strand
Strand 2	B	459	460	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	19	21	first strand
Strand 2	C	30	31	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9JEI

Analysis of interatomic Contacts of Structural Units in PDB entry:
9JEI