Analysis of interatomic Contacts of Structural Units in PDB entry:
9JEQ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9JEQ entry

There are 5 chains in PDB entry 9JEQ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	SER 2	ASN 340
G	ASN 5	ARG 62
A	CYS 3	PHE 354
R	ALA 31	THR 424
S	VAL 2	LEU 247

There are 25 helices in PDB entry 9JEQ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	2	25	Right-handed alpha
Helix 2	AA2	B	29	34	Right-handed alpha
Helix 3	AA3	G	6	24	Right-handed alpha
Helix 4	AA4	G	29	44	Right-handed alpha
Helix 5	AA5	A	6	31	Right-handed alpha
Helix 6	AA6	A	46	54	Right-handed alpha
Helix 7	AA7	A	207	212	Right-handed alpha
Helix 8	AA8	A	213	216	Right-handed 310
Helix 9	AA9	A	228	230	Right-handed 310
Helix 10	AB1	A	241	256	Right-handed alpha
Helix 11	AB2	A	270	281	Right-handed alpha
Helix 12	AB3	A	282	286	Right-handed 310
Helix 13	AB4	A	295	309	Right-handed alpha
Helix 14	AB5	A	329	348	Right-handed alpha
Helix 15	AB6	A	349	351	Right-handed 310
Helix 16	AB7	R	33	62	Right-handed alpha
Helix 17	AB8	R	67	97	Right-handed alpha
Helix 18	AB9	R	105	138	Right-handed alpha
Helix 19	AC1	R	138	146	Right-handed alpha
Helix 20	AC2	R	148	179	Right-handed alpha
Helix 21	AC3	R	196	207	Right-handed alpha
Helix 22	AC4	R	207	235	Right-handed alpha
Helix 23	AC5	R	348	384	Right-handed alpha
Helix 24	AC6	R	392	412	Right-handed alpha
Helix 25	AC7	R	417	424	Right-handed alpha

There are 14 sheets in PDB entry 9JEQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	47	51	first strand
Strand 2	B	336	339	anti-parallel
Strand 3	B	327	330	anti-parallel
Strand 4	B	317	320	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	63	first strand
Strand 2	B	69	74	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	88	94	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	103	105	first strand
Strand 2	B	111	114	anti-parallel
Strand 3	B	121	125	anti-parallel
Strand 4	B	134	139	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	151	first strand
Strand 2	B	156	161	anti-parallel
Strand 3	B	166	170	anti-parallel
Strand 4	B	175	180	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	187	192	first strand
Strand 2	B	198	203	anti-parallel
Strand 3	B	208	212	anti-parallel
Strand 4	B	218	222	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	229	234	first strand
Strand 2	B	240	245	anti-parallel
Strand 3	B	249	254	anti-parallel
Strand 4	B	260	265	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	273	278	first strand
Strand 2	B	284	289	anti-parallel
Strand 3	B	294	298	anti-parallel
Strand 4	B	303	308	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	185	190	first strand
Strand 2	A	195	200	anti-parallel
Strand 3	A	33	40	parallel
Strand 4	A	220	226	parallel
Strand 5	A	263	269	parallel
Strand 6	A	319	323	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	3	7	first strand
Strand 2	S	17	25	anti-parallel
Strand 3	S	78	84	anti-parallel
Strand 4	S	68	73	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	11	12	first strand
Strand 2	S	118	119	parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	56	60	first strand
Strand 2	S	45	52	anti-parallel
Strand 3	S	33	39	anti-parallel
Strand 4	S	93	99	anti-parallel
Strand 5	S	110	111	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	146	147	first strand
Strand 2	S	243	245	parallel
Strand 3	S	225	231	anti-parallel
Strand 4	S	174	179	anti-parallel
Strand 5	S	185	190	anti-parallel
Strand 6	S	194	195	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	146	147	first strand
Strand 2	S	243	245	parallel
Strand 3	S	225	231	anti-parallel
Strand 4	S	238	239	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	155	160	first strand
Strand 2	S	211	216	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9JEQ

Analysis of interatomic Contacts of Structural Units in PDB entry:
9JEQ