Analysis of interatomic Contacts of Structural Units in PDB entry:
9JF7

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9JF7 entry

There are 3 chains in PDB entry 9JF7 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ILE 46	CYS 389
B	ILE 46	CYS 389
C	ILE 46	CYS 389

There are 39 helices in PDB entry 9JF7. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	46	67	Right-handed alpha
Helix 2	AA2	A	93	96	Right-handed 310
Helix 3	AA3	A	97	102	Right-handed alpha
Helix 4	AA4	A	109	120	Right-handed alpha
Helix 5	AA5	A	123	132	Right-handed alpha
Helix 6	AA6	A	133	135	Right-handed 310
Helix 7	AA7	A	210	214	Right-handed 310
Helix 8	AA8	A	217	219	Right-handed 310
Helix 9	AA9	A	220	225	Right-handed alpha
Helix 10	AB1	A	255	279	Right-handed alpha
Helix 11	AB2	A	299	313	Right-handed alpha
Helix 12	AB3	A	365	381	Right-handed alpha
Helix 13	AB4	A	384	389	Right-handed alpha
Helix 14	AB5	B	47	67	Right-handed alpha
Helix 15	AB6	B	93	96	Right-handed 310
Helix 16	AB7	B	97	102	Right-handed alpha
Helix 17	AB8	B	109	120	Right-handed alpha
Helix 18	AB9	B	123	132	Right-handed alpha
Helix 19	AC1	B	133	135	Right-handed 310
Helix 20	AC2	B	210	214	Right-handed 310
Helix 21	AC3	B	217	219	Right-handed 310
Helix 22	AC4	B	220	225	Right-handed alpha
Helix 23	AC5	B	255	279	Right-handed alpha
Helix 24	AC6	B	299	313	Right-handed alpha
Helix 25	AC7	B	365	381	Right-handed alpha
Helix 26	AC8	B	384	389	Right-handed alpha
Helix 27	AC9	C	47	67	Right-handed alpha
Helix 28	AD1	C	93	96	Right-handed 310
Helix 29	AD2	C	97	102	Right-handed alpha
Helix 30	AD3	C	109	120	Right-handed alpha
Helix 31	AD4	C	123	132	Right-handed alpha
Helix 32	AD5	C	133	135	Right-handed 310
Helix 33	AD6	C	210	214	Right-handed 310
Helix 34	AD7	C	217	219	Right-handed 310
Helix 35	AD8	C	220	225	Right-handed alpha
Helix 36	AD9	C	255	279	Right-handed alpha
Helix 37	AE1	C	299	313	Right-handed alpha
Helix 38	AE2	C	365	381	Right-handed alpha
Helix 39	AE3	C	384	389	Right-handed alpha

There are 12 sheets in PDB entry 9JF7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	71	77	first strand
Strand 2	A	355	361	anti-parallel
Strand 3	A	234	244	parallel
Strand 4	A	344	350	parallel
Strand 5	A	188	194	anti-parallel
Strand 6	A	137	143	anti-parallel
Strand 7	A	156	157	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	71	77	first strand
Strand 2	A	355	361	anti-parallel
Strand 3	A	234	244	parallel
Strand 4	A	326	337	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	81	82	first strand
Strand 2	A	180	181	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	164	166	first strand
Strand 2	A	169	174	anti-parallel
Strand 3	A	86	91	anti-parallel
Strand 4	A	203	209	anti-parallel
Strand 5	A	226	229	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	71	77	first strand
Strand 2	B	355	361	anti-parallel
Strand 3	B	234	244	parallel
Strand 4	B	344	350	parallel
Strand 5	B	188	194	anti-parallel
Strand 6	B	137	143	anti-parallel
Strand 7	B	156	157	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	71	77	first strand
Strand 2	B	355	361	anti-parallel
Strand 3	B	234	244	parallel
Strand 4	B	326	337	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	81	82	first strand
Strand 2	B	180	181	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	164	166	first strand
Strand 2	B	169	174	anti-parallel
Strand 3	B	86	91	anti-parallel
Strand 4	B	203	209	anti-parallel
Strand 5	B	226	229	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	71	77	first strand
Strand 2	C	355	361	anti-parallel
Strand 3	C	234	244	parallel
Strand 4	C	344	350	parallel
Strand 5	C	188	194	anti-parallel
Strand 6	C	137	143	anti-parallel
Strand 7	C	156	157	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	71	77	first strand
Strand 2	C	355	361	anti-parallel
Strand 3	C	234	244	parallel
Strand 4	C	326	337	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	81	82	first strand
Strand 2	C	180	181	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	164	166	first strand
Strand 2	C	169	174	anti-parallel
Strand 3	C	86	91	anti-parallel
Strand 4	C	203	209	anti-parallel
Strand 5	C	226	229	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9JF7

Analysis of interatomic Contacts of Structural Units in PDB entry:
9JF7