Analysis of interatomic Contacts of Structural Units in PDB entry:
9JF9

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9JF9 entry

There are 16 chains in PDB entry 9JF9 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	HIS 1	ASP 907
B	HIS 1	ASP 907
C	C 1	C 1
C	A 5	A 5
C	G 7	G 7
C	A 9	A 9
C	C 15	C 15
C	A 17	G 18
C	G 23	G 23
D	C 1	C 1
D	A 5	A 5
D	G 7	G 7
D	A 9	A 9
D	C 15	C 15
D	A 17	G 18
D	G 23	G 23

There are 24 helices in PDB entry 9JF9. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	17	24	Right-handed 310
Helix 2	AA2	A	42	46	Right-handed 310
Helix 3	AA3	A	71	75	Right-handed 310
Helix 4	AA4	A	132	136	Right-handed 310
Helix 5	AA5	A	148	152	Right-handed 310
Helix 6	AA6	A	255	266	Right-handed alpha
Helix 7	AA7	A	314	318	Right-handed 310
Helix 8	AA8	A	350	359	Right-handed alpha
Helix 9	AA9	A	413	417	Right-handed 310
Helix 10	AB1	A	436	446	Right-handed alpha
Helix 11	AB2	A	638	644	Right-handed 310
Helix 12	AB3	A	863	870	Right-handed alpha
Helix 13	AB4	B	18	24	Right-handed 310
Helix 14	AB5	B	42	46	Right-handed 310
Helix 15	AB6	B	71	75	Right-handed 310
Helix 16	AB7	B	132	137	Right-handed alpha
Helix 17	AB8	B	150	152	Right-handed 310
Helix 18	AB9	B	255	266	Right-handed alpha
Helix 19	AC1	B	314	318	Right-handed 310
Helix 20	AC2	B	324	331	Right-handed 310
Helix 21	AC3	B	353	359	Right-handed alpha
Helix 22	AC4	B	435	446	Right-handed alpha
Helix 23	AC5	B	639	644	Right-handed 310
Helix 24	AC6	B	863	870	Right-handed alpha

There are 32 sheets in PDB entry 9JF9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	7	13	first strand
Strand 2	A	28	35	parallel
Strand 3	A	61	64	parallel
Strand 4	A	93	96	parallel
Strand 5	A	117	120	parallel
Strand 6	A	144	146	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	56	57	first strand
Strand 2	A	81	82	parallel
Strand 3	A	111	112	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	213	216	first strand
Strand 2	A	225	227	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	246	248	first strand
Strand 2	A	252	254	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	278	279	first strand
Strand 2	A	284	285	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	293	294	first strand
Strand 2	A	301	302	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	335	336	first strand
Strand 2	A	363	364	parallel
Strand 3	A	387	388	parallel
Strand 4	A	420	421	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	340	342	first strand
Strand 2	A	368	371	parallel
Strand 3	A	398	403	parallel
Strand 4	A	425	429	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	472	473	first strand
Strand 2	A	582	583	parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	479	480	first strand
Strand 2	A	485	488	anti-parallel
Strand 3	A	550	553	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	530	534	first strand
Strand 2	A	502	509	anti-parallel
Strand 3	A	567	569	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	530	534	first strand
Strand 2	A	502	509	anti-parallel
Strand 3	A	561	564	anti-parallel
Strand 4	A	586	589	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	599	605	first strand
Strand 2	A	610	616	anti-parallel
Strand 3	A	767	771	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	759	762	first strand
Strand 2	A	627	634	anti-parallel
Strand 3	A	778	786	anti-parallel
Strand 4	A	799	804	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	819	822	first strand
Strand 2	A	828	831	anti-parallel
Strand 3	A	873	874	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	857	858	first strand
Strand 2	A	842	851	anti-parallel
Strand 3	A	880	890	anti-parallel
Strand 4	A	893	897	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	861	862	first strand
Strand 2	A	842	851	anti-parallel
Strand 3	A	880	890	anti-parallel
Strand 4	A	901	905	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	6	8	first strand
Strand 2	B	26	29	parallel
Strand 3	B	56	57	parallel
Strand 4	B	81	82	parallel
Strand 5	B	111	112	parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	11	14	first strand
Strand 2	B	33	38	parallel
Strand 3	B	61	66	parallel
Strand 4	B	93	96	parallel
Strand 5	B	117	122	parallel
Strand 6	B	144	148	parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	246	248	first strand
Strand 2	B	252	254	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	278	279	first strand
Strand 2	B	284	285	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	293	294	first strand
Strand 2	B	301	302	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	320	321	first strand
Strand 2	B	341	342	parallel
Strand 3	B	368	370	parallel
Strand 4	B	400	402	parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	335	336	first strand
Strand 2	B	363	364	parallel
Strand 3	B	387	388	parallel
Strand 4	B	420	421	parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	472	473	first strand
Strand 2	B	582	583	parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	475	480	first strand
Strand 2	B	485	489	anti-parallel
Strand 3	B	552	553	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	530	534	first strand
Strand 2	B	502	509	anti-parallel
Strand 3	B	562	569	anti-parallel
Strand 4	B	586	588	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	599	604	first strand
Strand 2	B	611	616	anti-parallel
Strand 3	B	767	770	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	627	634	first strand
Strand 2	B	778	786	anti-parallel
Strand 3	B	799	804	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	819	822	first strand
Strand 2	B	828	831	anti-parallel
Strand 3	B	872	874	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	861	862	first strand
Strand 2	B	842	845	anti-parallel
Strand 3	B	887	890	anti-parallel
Strand 4	B	893	897	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	857	858	first strand
Strand 2	B	848	851	anti-parallel
Strand 3	B	880	885	anti-parallel
Strand 4	B	901	905	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9JF9

Analysis of interatomic Contacts of Structural Units in PDB entry:
9JF9