Analysis of interatomic Contacts of Structural Units in PDB entry:
9JFC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9JFC entry

There are 4 chains in PDB entry 9JFC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LYS 270
E
 MET 1LYS 270
I
 GLY -1LYS 270
M
 GLY -1LYS 270
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 47 helices in PDB entry 9JFC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 24Right-handed alpha
Helix 2
AA2
A
25 27Right-handed 310
Helix 3
AA3
A
32 59Right-handed alpha
Helix 4
AA4
A
75 79Right-handed 310
Helix 5
AA5
A
90 97Right-handed alpha
Helix 6
AA6
A
166 181Right-handed alpha
Helix 7
AA7
A
191 201Right-handed alpha
Helix 8
AA8
A
213 227Right-handed alpha
Helix 9
AA9
A
239 244Right-handed alpha
Helix 10
AB1
A
250 262Right-handed alpha
Helix 11
AB2
A
263 265Right-handed 310
Helix 12
AB3
A
266 270Right-handed 310
Helix 13
AB4
E
2 23Right-handed alpha
Helix 14
AB5
E
23 30Right-handed alpha
Helix 15
AB6
E
32 59Right-handed alpha
Helix 16
AB7
E
75 79Right-handed 310
Helix 17
AB8
E
90 97Right-handed alpha
Helix 18
AB9
E
165 181Right-handed alpha
Helix 19
AC1
E
191 201Right-handed alpha
Helix 20
AC2
E
213 227Right-handed alpha
Helix 21
AC3
E
239 244Right-handed alpha
Helix 22
AC4
E
250 262Right-handed alpha
Helix 23
AC5
E
263 265Right-handed 310
Helix 24
AC6
E
266 270Right-handed 310
Helix 25
AC7
I
2 28Right-handed alpha
Helix 26
AC8
I
32 59Right-handed alpha
Helix 27
AC9
I
75 79Right-handed 310
Helix 28
AD1
I
90 97Right-handed alpha
Helix 29
AD2
I
165 181Right-handed alpha
Helix 30
AD3
I
191 201Right-handed alpha
Helix 31
AD4
I
213 227Right-handed alpha
Helix 32
AD5
I
239 244Right-handed alpha
Helix 33
AD6
I
250 262Right-handed alpha
Helix 34
AD7
I
263 265Right-handed 310
Helix 35
AD8
I
266 270Right-handed 310
Helix 36
AD9
M
2 24Right-handed alpha
Helix 37
AE1
M
25 27Right-handed 310
Helix 38
AE2
M
32 59Right-handed alpha
Helix 39
AE3
M
75 79Right-handed 310
Helix 40
AE4
M
90 97Right-handed alpha
Helix 41
AE5
M
166 180Right-handed alpha
Helix 42
AE6
M
191 201Right-handed alpha
Helix 43
AE7
M
213 227Right-handed alpha
Helix 44
AE8
M
239 244Right-handed alpha
Helix 45
AE9
M
250 261Right-handed alpha
Helix 46
AF1
M
262 265Right-handed 310
Helix 47
AF2
M
266 270Right-handed 310
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There are 8 sheets in PDB entry 9JFC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
70 72first strand
Strand 2
A
63 66anti-parallel
Strand 3
A
81 89parallel
Strand 4
A
102 109anti-parallel
Strand 5
A
112 120anti-parallel
Strand 6
A
125 130anti-parallel
Strand 7
A
134 137anti-parallel
Strand 8
A
140 141anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
185 187first strand
Strand 2
A
154 156parallel
Strand 3
A
206 209parallel
Strand 4
A
246 249anti-parallel
Strand 5
A
230 232anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
70 72first strand
Strand 2
E
63 66anti-parallel
Strand 3
E
81 89parallel
Strand 4
E
102 109anti-parallel
Strand 5
E
112 120anti-parallel
Strand 6
E
125 130anti-parallel
Strand 7
E
134 137anti-parallel
Strand 8
E
140 141anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
185 187first strand
Strand 2
E
154 156parallel
Strand 3
E
206 209parallel
Strand 4
E
246 249anti-parallel
Strand 5
E
230 232anti-parallel
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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
70 72first strand
Strand 2
I
63 66anti-parallel
Strand 3
I
81 89parallel
Strand 4
I
102 109anti-parallel
Strand 5
I
112 120anti-parallel
Strand 6
I
125 130anti-parallel
Strand 7
I
135 137anti-parallel
Strand 8
I
140 141anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
185 187first strand
Strand 2
I
154 157parallel
Strand 3
I
206 209parallel
Strand 4
I
246 249anti-parallel
Strand 5
I
230 232anti-parallel
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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
M
70 72first strand
Strand 2
M
63 66anti-parallel
Strand 3
M
81 89parallel
Strand 4
M
102 109anti-parallel
Strand 5
M
112 120anti-parallel
Strand 6
M
125 130anti-parallel
Strand 7
M
135 137anti-parallel
Strand 8
M
140 141anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
M
185 187first strand
Strand 2
M
154 157parallel
Strand 3
M
206 209parallel
Strand 4
M
246 249anti-parallel
Strand 5
M
230 232anti-parallel
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