Analysis of interatomic Contacts of Structural Units in PDB entry:
9JFF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9JFF entry

There is 1 chain in PDB entry 9JFF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 3GLU 335
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 9JFF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
10 19Right-handed alpha
Helix 2
AA2
A
21 25Right-handed 310
Helix 3
AA3
A
43 49Right-handed alpha
Helix 4
AA4
A
52 68Right-handed alpha
Helix 5
AA5
A
79 85Right-handed alpha
Helix 6
AA6
A
86 91Right-handed alpha
Helix 7
AA7
A
105 114Right-handed alpha
Helix 8
AA8
A
123 127Right-handed 310
Helix 9
AA9
A
148 161Right-handed alpha
Helix 10
AB1
A
176 180Right-handed 310
Helix 11
AB2
A
184 189Right-handed alpha
Helix 12
AB3
A
197 202Right-handed alpha
Helix 13
AB4
A
214 226Right-handed alpha
Helix 14
AB5
A
231 244Right-handed alpha
Helix 15
AB6
A
245 267Right-handed alpha
Helix 16
AB7
A
285 296Right-handed alpha
Helix 17
AB8
A
317 331Right-handed alpha
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There are 3 sheets in PDB entry 9JFF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
26 27first strand
Strand 2
A
298 299parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
75 77first strand
Strand 2
A
209 212anti-parallel
Strand 3
A
191 196anti-parallel
Strand 4
A
165 169parallel
Strand 5
A
131 137parallel
Strand 6
A
96 100parallel
Strand 7
A
118 121parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
270 275first strand
Strand 2
A
278 282anti-parallel
Strand 3
A
306 313anti-parallel
Strand 4
A
301 303anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il