Analysis of interatomic Contacts of Structural Units in PDB entry:
9JFI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9JFI entry

There are 4 chains in PDB entry 9JFI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 10PHE 61
A
 LEU 63GLU 335
B
 GLU 12PHE 61
B
 LEU 63GLU 335
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 33 helices in PDB entry 9JFI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
13 22Right-handed alpha
Helix 2
AA2
A
25 28Right-handed 310
Helix 3
AA3
A
37 45Right-handed alpha
Helix 4
AA4
A
54 56Right-handed 310
Helix 5
AA5
A
62 72Right-handed alpha
Helix 6
AA6
A
74 80Right-handed alpha
Helix 7
AA7
A
88 102Right-handed alpha
Helix 8
AA8
A
114 124Right-handed alpha
Helix 9
AA9
A
134 150Right-handed alpha
Helix 10
AB1
A
159 177Right-handed alpha
Helix 11
AB2
A
190 204Right-handed alpha
Helix 12
AB3
A
218 227Right-handed alpha
Helix 13
AB5
A
248 259Right-handed alpha
Helix 14
AB6
A
266 282Right-handed alpha
Helix 15
AB7
A
286 304Right-handed alpha
Helix 16
AB8
A
322 333Right-handed alpha
Helix 17
AB9
B
13 22Right-handed alpha
Helix 18
AC1
B
25 28Right-handed 310
Helix 19
AC2
B
37 45Right-handed alpha
Helix 20
AC3
B
54 56Right-handed 310
Helix 21
AC4
B
62 72Right-handed alpha
Helix 22
AC5
B
74 81Right-handed alpha
Helix 23
AC6
B
88 101Right-handed alpha
Helix 24
AC7
B
114 124Right-handed alpha
Helix 25
AC8
B
134 149Right-handed alpha
Helix 26
AC9
B
159 177Right-handed alpha
Helix 27
AD1
B
190 204Right-handed alpha
Helix 28
AD2
B
218 227Right-handed alpha
Helix 29
AD3
B
248 259Right-handed alpha
Helix 30
AD4
B
266 282Right-handed alpha
Helix 31
AD5
B
290 304Right-handed alpha
Helix 32
AD6
B
321 323Right-handed 310
Helix 33
AD7
B
324 335Right-handed alpha
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There are 4 sheets in PDB entry 9JFI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
34 36first strand
Strand 2
A
47 52anti-parallel
Strand 3
A
309 314parallel
Strand 4
A
182 186parallel
Strand 5
A
208 214parallel
Strand 6
A
261 265parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
127 130first strand
Strand 2
A
105 109parallel
Strand 3
A
82 85parallel
Strand 4
A
152 153parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
34 36first strand
Strand 2
B
47 52anti-parallel
Strand 3
B
309 314parallel
Strand 4
B
182 186parallel
Strand 5
B
208 214parallel
Strand 6
B
261 265parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
127 130first strand
Strand 2
B
105 109parallel
Strand 3
B
82 85parallel
Strand 4
B
152 154parallel
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