Analysis of interatomic Contacts of Structural Units in PDB entry:
9JFJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9JFJ entry

There are 4 chains in PDB entry 9JFJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 228	THR 459
B	GLN 230	ILE 458
C	LEU 226	THR 459
D	MET 223	ILE 458

There are 27 helices in PDB entry 9JFJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	228	274	Right-handed alpha
Helix 2	AA2	A	278	306	Right-handed alpha
Helix 3	AA3	A	316	335	Right-handed alpha
Helix 4	AA4	A	353	373	Right-handed alpha
Helix 5	AA5	A	406	410	Right-handed 310
Helix 6	AA6	A	422	434	Right-handed alpha
Helix 7	AA7	B	231	274	Right-handed alpha
Helix 8	AA8	B	278	306	Right-handed alpha
Helix 9	AA9	B	316	328	Right-handed alpha
Helix 10	AB1	B	328	335	Right-handed alpha
Helix 11	AB2	B	353	372	Right-handed alpha
Helix 12	AB3	B	405	410	Right-handed 310
Helix 13	AB4	B	422	435	Right-handed alpha
Helix 14	AB5	C	227	242	Right-handed alpha
Helix 15	AB6	C	243	273	Right-handed alpha
Helix 16	AB7	C	278	306	Right-handed alpha
Helix 17	AB8	C	316	335	Right-handed alpha
Helix 18	AB9	C	353	373	Right-handed alpha
Helix 19	AC1	C	405	410	Right-handed 310
Helix 20	AC2	C	422	434	Right-handed alpha
Helix 21	AC3	D	228	274	Right-handed alpha
Helix 22	AC4	D	278	306	Right-handed alpha
Helix 23	AC5	D	316	328	Right-handed alpha
Helix 24	AC6	D	328	335	Right-handed alpha
Helix 25	AC7	D	353	372	Right-handed alpha
Helix 26	AC8	D	403	408	Right-handed 310
Helix 27	AC9	D	422	435	Right-handed alpha

There are 8 sheets in PDB entry 9JFJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	313	315	first strand
Strand 2	A	350	352	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	337	341	first strand
Strand 2	A	376	384	parallel
Strand 3	A	389	394	anti-parallel
Strand 4	A	447	454	anti-parallel
Strand 5	A	437	443	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	313	315	first strand
Strand 2	B	350	352	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	337	341	first strand
Strand 2	B	376	385	parallel
Strand 3	B	388	395	anti-parallel
Strand 4	B	447	455	anti-parallel
Strand 5	B	437	443	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	313	315	first strand
Strand 2	C	350	352	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	337	340	first strand
Strand 2	C	376	385	parallel
Strand 3	C	388	395	anti-parallel
Strand 4	C	447	455	anti-parallel
Strand 5	C	437	443	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	313	315	first strand
Strand 2	D	350	352	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	337	340	first strand
Strand 2	D	376	384	parallel
Strand 3	D	388	396	anti-parallel
Strand 4	D	447	455	anti-parallel
Strand 5	D	437	441	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9JFJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
9JFJ