Analysis of interatomic Contacts of Structural Units in PDB entry:
9JFK

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9JFK entry

There are 7 chains in PDB entry 9JFK (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 4	ASN 340
B	VAL 5	VAL 246
D	GLN 11	PHE 61
N	GLN 1	VAL 126
R	LEU 45	LEU 326
C	ASP 1	ASP 1
C	PHE 3	VAL 8

There are 27 helices in PDB entry 9JFK. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	4	25	Right-handed alpha
Helix 2	AA2	A	29	34	Right-handed alpha
Helix 3	AA3	A	128	132	Right-handed 310
Helix 4	AA4	B	6	31	Right-handed alpha
Helix 5	AA5	B	95	101	Right-handed 310
Helix 6	AA6	B	117	130	Right-handed alpha
Helix 7	AA7	B	145	156	Right-handed alpha
Helix 8	AA8	B	159	164	Right-handed alpha
Helix 9	AA9	B	165	168	Right-handed 310
Helix 10	AB1	B	183	205	Right-handed alpha
Helix 11	AB2	B	222	243	Right-handed alpha
Helix 12	AB3	D	12	24	Right-handed alpha
Helix 13	AB4	D	29	44	Right-handed alpha
Helix 14	AB5	R	46	79	Right-handed alpha
Helix 15	AB6	R	86	102	Right-handed alpha
Helix 16	AB7	R	102	109	Right-handed alpha
Helix 17	AB8	R	119	154	Right-handed alpha
Helix 18	AB9	R	154	160	Right-handed alpha
Helix 19	AC1	R	164	188	Right-handed alpha
Helix 20	AC2	R	207	220	Right-handed alpha
Helix 21	AC3	R	220	242	Right-handed alpha
Helix 22	AC4	R	258	271	Right-handed alpha
Helix 23	AC5	R	272	275	Right-handed 310
Helix 24	AC6	R	276	281	Right-handed alpha
Helix 25	AC7	R	282	284	Right-handed 310
Helix 26	AC8	R	289	316	Right-handed alpha
Helix 27	AC9	R	319	326	Right-handed alpha

There are 10 sheets in PDB entry 9JFK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	46	50	first strand
Strand 2	A	336	340	anti-parallel
Strand 3	A	327	331	anti-parallel
Strand 4	A	315	320	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	58	63	first strand
Strand 2	A	69	74	anti-parallel
Strand 3	A	78	83	anti-parallel
Strand 4	A	88	94	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	100	105	first strand
Strand 2	A	111	116	anti-parallel
Strand 3	A	121	125	anti-parallel
Strand 4	A	134	139	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	146	151	first strand
Strand 2	A	156	161	anti-parallel
Strand 3	A	165	170	anti-parallel
Strand 4	A	176	181	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	189	192	first strand
Strand 2	A	198	203	anti-parallel
Strand 3	A	207	212	anti-parallel
Strand 4	A	218	222	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	229	234	first strand
Strand 2	A	240	245	anti-parallel
Strand 3	A	250	254	anti-parallel
Strand 4	A	259	264	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	273	278	first strand
Strand 2	A	284	289	anti-parallel
Strand 3	A	293	298	anti-parallel
Strand 4	A	304	307	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	69	76	first strand
Strand 2	B	79	86	anti-parallel
Strand 3	B	34	40	parallel
Strand 4	B	105	111	parallel
Strand 5	B	138	144	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	3	7	first strand
Strand 2	N	18	25	anti-parallel
Strand 3	N	78	83	anti-parallel
Strand 4	N	68	73	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	58	60	first strand
Strand 2	N	45	51	anti-parallel
Strand 3	N	34	39	anti-parallel
Strand 4	N	92	98	anti-parallel
Strand 5	N	122	124	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9JFK

Analysis of interatomic Contacts of Structural Units in PDB entry:
9JFK