Analysis of interatomic Contacts of Structural Units in PDB entry:
9JFL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9JFL entry

There are 2 chains in PDB entry 9JFL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 LYS 4SER 596
A
 VAL 3SER 596
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 60 helices in PDB entry 9JFL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
10 16Right-handed alpha
Helix 2
AA2
B
32 52Right-handed alpha
Helix 3
AA3
B
84 105Right-handed alpha
Helix 4
AA4
B
114 125Right-handed alpha
Helix 5
AA5
B
149 158Right-handed alpha
Helix 6
AA6
B
166 185Right-handed alpha
Helix 7
AA7
B
192 210Right-handed alpha
Helix 8
AA8
B
220 227Right-handed alpha
Helix 9
AA9
B
239 252Right-handed alpha
Helix 10
AB1
B
255 272Right-handed alpha
Helix 11
AB2
B
273 290Right-handed alpha
Helix 12
AB3
B
297 306Right-handed alpha
Helix 13
AB4
B
314 334Right-handed alpha
Helix 14
AB5
B
346 359Right-handed alpha
Helix 15
AB6
B
362 364Right-handed 310
Helix 16
AB7
B
365 375Right-handed alpha
Helix 17
AB8
B
376 396Right-handed alpha
Helix 18
AB9
B
402 420Right-handed alpha
Helix 19
AC1
B
421 423Right-handed 310
Helix 20
AC2
B
424 440Right-handed alpha
Helix 21
AC3
B
444 452Right-handed alpha
Helix 22
AC4
B
461 474Right-handed alpha
Helix 23
AC5
B
474 480Right-handed alpha
Helix 24
AC6
B
485 492Right-handed alpha
Helix 25
AC7
B
529 531Right-handed 310
Helix 26
AC8
B
552 557Right-handed 310
Helix 27
AC9
B
563 570Right-handed alpha
Helix 28
AD1
B
574 594Right-handed alpha
Helix 29
AD2
A
10 16Right-handed alpha
Helix 30
AD3
A
32 51Right-handed alpha
Helix 31
AD4
A
84 102Right-handed alpha
Helix 32
AD5
A
107 111Right-handed 310
Helix 33
AD6
A
115 124Right-handed alpha
Helix 34
AD7
A
145 159Right-handed alpha
Helix 35
AD8
A
166 186Right-handed alpha
Helix 36
AD9
A
192 210Right-handed alpha
Helix 37
AE1
A
220 227Right-handed alpha
Helix 38
AE2
A
239 252Right-handed alpha
Helix 39
AE3
A
255 270Right-handed alpha
Helix 40
AE4
A
273 290Right-handed alpha
Helix 41
AE5
A
294 296Right-handed 310
Helix 42
AE6
A
297 304Right-handed alpha
Helix 43
AE7
A
314 334Right-handed alpha
Helix 44
AE8
A
346 359Right-handed alpha
Helix 45
AE9
A
362 364Right-handed 310
Helix 46
AF1
A
365 374Right-handed alpha
Helix 47
AF2
A
376 396Right-handed alpha
Helix 48
AF3
A
402 420Right-handed alpha
Helix 49
AF4
A
421 423Right-handed 310
Helix 50
AF5
A
424 440Right-handed alpha
Helix 51
AF6
A
443 452Right-handed alpha
Helix 52
AF7
A
461 473Right-handed alpha
Helix 53
AF8
A
474 480Right-handed alpha
Helix 54
AF9
A
485 493Right-handed alpha
Helix 55
AG1
A
515 519Right-handed 310
Helix 56
AG2
A
520 525Right-handed alpha
Helix 57
AG3
A
529 531Right-handed 310
Helix 58
AG4
A
549 556Right-handed 310
Helix 59
AG5
A
562 569Right-handed alpha
Helix 60
AG6
A
574 593Right-handed alpha
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There are 8 sheets in PDB entry 9JFL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
8 9first strand
Strand 2
B
212 213anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
143 144first strand
Strand 2
B
18 21parallel
Strand 3
B
77 83parallel
Strand 4
B
63 65anti-parallel
Strand 5
B
215 217parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
128 130first strand
Strand 2
B
139 141anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
506 508first strand
Strand 2
B
533 535anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
8 9first strand
Strand 2
A
211 213anti-parallel
Strand 3
A
57 58parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
143 144first strand
Strand 2
A
18 21parallel
Strand 3
A
77 83parallel
Strand 4
A
63 69anti-parallel
Strand 5
A
215 217parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
128 129first strand
Strand 2
A
140 141anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
506 508first strand
Strand 2
A
533 535anti-parallel
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