Analysis of interatomic Contacts of Structural Units in PDB entry:
9JFN

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9JFN entry

There are 8 chains in PDB entry 9JFN (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 61	GLY 441
E	THR 503	SER 543
B	VAL 61	GLY 441
F	THR 503	SER 543
C	ASN 60	GLY 441
G	THR 503	SER 543
D	ASN 60	GLY 441
H	THR 503	SER 543

There are 80 helices in PDB entry 9JFN. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	63	74	Right-handed alpha
Helix 2	AA2	A	75	88	Right-handed alpha
Helix 3	AA3	A	108	120	Right-handed alpha
Helix 4	AA4	A	141	152	Right-handed alpha
Helix 5	AA5	A	153	161	Right-handed alpha
Helix 6	AA6	A	162	181	Right-handed alpha
Helix 7	AA7	A	191	200	Right-handed alpha
Helix 8	AA8	A	204	217	Right-handed alpha
Helix 9	AA9	A	225	229	Right-handed 310
Helix 10	AB1	A	240	244	Right-handed 310
Helix 11	AB2	A	246	252	Right-handed alpha
Helix 12	AB3	A	296	301	Right-handed alpha
Helix 13	AB4	A	306	308	Right-handed 310
Helix 14	AB5	A	309	317	Right-handed alpha
Helix 15	AB6	A	372	374	Right-handed 310
Helix 16	AB7	A	375	380	Right-handed alpha
Helix 17	AB8	A	420	423	Right-handed 310
Helix 18	AB9	E	509	515	Right-handed alpha
Helix 19	AC1	E	519	524	Right-handed alpha
Helix 20	AC2	E	525	528	Right-handed 310
Helix 21	AC3	B	63	74	Right-handed alpha
Helix 22	AC4	B	75	88	Right-handed alpha
Helix 23	AC5	B	108	120	Right-handed alpha
Helix 24	AC6	B	141	152	Right-handed alpha
Helix 25	AC7	B	153	160	Right-handed alpha
Helix 26	AC8	B	162	181	Right-handed alpha
Helix 27	AC9	B	191	200	Right-handed alpha
Helix 28	AD1	B	204	217	Right-handed alpha
Helix 29	AD2	B	240	244	Right-handed 310
Helix 30	AD3	B	246	252	Right-handed alpha
Helix 31	AD4	B	296	301	Right-handed alpha
Helix 32	AD5	B	306	308	Right-handed 310
Helix 33	AD6	B	309	317	Right-handed alpha
Helix 34	AD7	B	356	360	Right-handed 310
Helix 35	AD8	B	372	374	Right-handed 310
Helix 36	AD9	B	375	380	Right-handed alpha
Helix 37	AE1	B	420	423	Right-handed 310
Helix 38	AE2	F	509	515	Right-handed alpha
Helix 39	AE3	F	519	524	Right-handed alpha
Helix 40	AE4	F	525	528	Right-handed 310
Helix 41	AE5	C	63	74	Right-handed alpha
Helix 42	AE6	C	75	88	Right-handed alpha
Helix 43	AE7	C	108	120	Right-handed alpha
Helix 44	AE8	C	141	152	Right-handed alpha
Helix 45	AE9	C	153	160	Right-handed alpha
Helix 46	AF1	C	162	181	Right-handed alpha
Helix 47	AF2	C	191	200	Right-handed alpha
Helix 48	AF3	C	204	217	Right-handed alpha
Helix 49	AF4	C	225	229	Right-handed 310
Helix 50	AF5	C	240	244	Right-handed 310
Helix 51	AF6	C	246	252	Right-handed alpha
Helix 52	AF7	C	296	301	Right-handed alpha
Helix 53	AF8	C	306	308	Right-handed 310
Helix 54	AF9	C	309	317	Right-handed alpha
Helix 55	AG1	C	356	360	Right-handed 310
Helix 56	AG2	C	372	374	Right-handed 310
Helix 57	AG3	C	375	380	Right-handed alpha
Helix 58	AG4	C	420	423	Right-handed 310
Helix 59	AG5	G	509	515	Right-handed alpha
Helix 60	AG6	G	519	524	Right-handed alpha
Helix 61	AG7	G	525	528	Right-handed 310
Helix 62	AG8	D	63	74	Right-handed alpha
Helix 63	AG9	D	75	88	Right-handed alpha
Helix 64	AH1	D	108	120	Right-handed alpha
Helix 65	AH2	D	141	152	Right-handed alpha
Helix 66	AH3	D	153	160	Right-handed alpha
Helix 67	AH4	D	162	182	Right-handed alpha
Helix 68	AH5	D	191	200	Right-handed alpha
Helix 69	AH6	D	204	217	Right-handed alpha
Helix 70	AH7	D	240	244	Right-handed 310
Helix 71	AH8	D	246	252	Right-handed alpha
Helix 72	AH9	D	296	301	Right-handed alpha
Helix 73	AI1	D	306	308	Right-handed 310
Helix 74	AI2	D	309	317	Right-handed alpha
Helix 75	AI3	D	372	374	Right-handed 310
Helix 76	AI4	D	375	380	Right-handed alpha
Helix 77	AI5	D	420	423	Right-handed 310
Helix 78	AI6	H	509	515	Right-handed alpha
Helix 79	AI7	H	519	524	Right-handed alpha
Helix 80	AI8	H	525	528	Right-handed 310

There are 12 sheets in PDB entry 9JFN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	267	268	first strand
Strand 2	E	537	541	anti-parallel
Strand 3	E	516	518	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	274	279	first strand
Strand 2	A	320	325	anti-parallel
Strand 3	E	503	508	anti-parallel
Strand 4	A	402	408	anti-parallel
Strand 5	A	385	391	anti-parallel
Strand 6	A	340	348	anti-parallel
Strand 7	A	427	428	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	333	335	first strand
Strand 2	A	433	438	anti-parallel
Strand 3	A	415	418	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	267	268	first strand
Strand 2	F	537	541	anti-parallel
Strand 3	F	516	518	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	274	279	first strand
Strand 2	B	320	325	anti-parallel
Strand 3	F	503	508	anti-parallel
Strand 4	B	402	408	anti-parallel
Strand 5	B	385	391	anti-parallel
Strand 6	B	340	348	anti-parallel
Strand 7	B	427	428	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	333	335	first strand
Strand 2	B	433	438	anti-parallel
Strand 3	B	415	418	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	267	268	first strand
Strand 2	G	537	541	anti-parallel
Strand 3	G	516	518	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	274	279	first strand
Strand 2	C	320	325	anti-parallel
Strand 3	G	503	508	anti-parallel
Strand 4	C	402	408	anti-parallel
Strand 5	C	385	391	anti-parallel
Strand 6	C	340	348	anti-parallel
Strand 7	C	427	428	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	333	335	first strand
Strand 2	C	433	438	anti-parallel
Strand 3	C	415	418	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	267	268	first strand
Strand 2	H	537	541	anti-parallel
Strand 3	H	516	518	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	274	279	first strand
Strand 2	D	320	325	anti-parallel
Strand 3	H	503	508	anti-parallel
Strand 4	D	402	408	anti-parallel
Strand 5	D	385	391	anti-parallel
Strand 6	D	340	348	anti-parallel
Strand 7	D	427	428	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	333	335	first strand
Strand 2	D	433	438	anti-parallel
Strand 3	D	415	418	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9JFN

Analysis of interatomic Contacts of Structural Units in PDB entry:
9JFN