Analysis of interatomic Contacts of Structural Units in PDB entry:
9JFO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9JFO entry

There are 4 chains in PDB entry 9JFO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 6MET 478
C
 C 11 G 31
D
 C 1 C 14
F
 G 1 G 179
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 9JFO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
26 51Right-handed alpha
Helix 2
AA2
A
52 54Right-handed 310
Helix 3
AA3
A
71 76Right-handed alpha
Helix 4
AA4
A
77 88Right-handed alpha
Helix 5
AA5
A
95 99Right-handed 310
Helix 6
AA6
A
108 117Right-handed alpha
Helix 7
AA7
A
148 152Right-handed 310
Helix 8
AA8
A
191 198Right-handed alpha
Helix 9
AA9
A
274 276Right-handed 310
Helix 10
AB1
A
277 290Right-handed alpha
Helix 11
AB2
A
299 319Right-handed alpha
Helix 12
AB3
A
339 373Right-handed alpha
Helix 13
AB4
A
394 401Right-handed alpha
Helix 14
AB5
A
402 417Right-handed alpha
Helix 15
AB6
A
466 478Right-handed alpha
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There are 4 sheets in PDB entry 9JFO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
9 13first strand
Strand 2
A
237 242anti-parallel
Strand 3
A
182 184anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
143 147first strand
Strand 2
A
205 209anti-parallel
Strand 3
A
218 222anti-parallel
Strand 4
A
19 23anti-parallel
Strand 5
A
175 176anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
248 250first strand
Strand 2
A
375 378parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
260 261first strand
Strand 2
A
267 268anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il