Analysis of interatomic Contacts of Structural Units in PDB entry:
9JFP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9JFP entry

There are 4 chains in PDB entry 9JFP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 G 16 G 31
D
 C 1 G 14
F
 G 1 G 182
A
 SER 6MET 478
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 9JFP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
26 51Right-handed alpha
Helix 2
AA2
A
52 54Right-handed 310
Helix 3
AA3
A
72 77Right-handed alpha
Helix 4
AA4
A
77 88Right-handed alpha
Helix 5
AA5
A
89 95Right-handed 310
Helix 6
AA6
A
96 101Right-handed alpha
Helix 7
AA7
A
108 117Right-handed alpha
Helix 8
AA8
A
148 150Right-handed 310
Helix 9
AA9
A
191 198Right-handed alpha
Helix 10
AB1
A
272 277Right-handed alpha
Helix 11
AB2
A
277 289Right-handed alpha
Helix 12
AB3
A
299 319Right-handed alpha
Helix 13
AB4
A
339 375Right-handed alpha
Helix 14
AB5
A
384 388Right-handed 310
Helix 15
AB6
A
394 399Right-handed alpha
Helix 16
AB7
A
402 415Right-handed alpha
Helix 17
AB8
A
466 478Right-handed alpha
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There are 3 sheets in PDB entry 9JFP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
9 13first strand
Strand 2
A
238 242anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
142 147first strand
Strand 2
A
205 210anti-parallel
Strand 3
A
218 224anti-parallel
Strand 4
A
16 24anti-parallel
Strand 5
A
173 176anti-parallel
Strand 6
A
161 164anti-parallel
Strand 7
A
152 154anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
252 253first strand
Strand 2
A
258 262anti-parallel
Strand 3
A
267 269anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il