Analysis of interatomic Contacts of Structural Units in PDB entry:
9JFQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9JFQ entry

There are 4 chains in PDB entry 9JFQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 6VAL 483
C
 C 10 G 31
F
 G 1 G 180
G
 C 1 A 39
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 9JFQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
26 51Right-handed alpha
Helix 2
AA2
A
77 88Right-handed alpha
Helix 3
AA3
A
95 101Right-handed alpha
Helix 4
AA4
A
109 117Right-handed alpha
Helix 5
AA5
A
148 152Right-handed 310
Helix 6
AA6
A
191 199Right-handed alpha
Helix 7
AA7
A
272 277Right-handed alpha
Helix 8
AA8
A
277 289Right-handed alpha
Helix 9
AA9
A
299 319Right-handed alpha
Helix 10
AB1
A
339 374Right-handed alpha
Helix 11
AB2
A
394 399Right-handed alpha
Helix 12
AB3
A
402 414Right-handed alpha
Helix 13
AB4
A
441 446Right-handed 310
Helix 14
AB5
A
462 481Right-handed alpha
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There are 5 sheets in PDB entry 9JFQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
8 13first strand
Strand 2
A
237 243anti-parallel
Strand 3
A
182 184anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
18 20first strand
Strand 2
A
220 222anti-parallel
Strand 3
A
205 208anti-parallel
Strand 4
A
144 147anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
210 211first strand
Strand 2
A
217 218anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
248 250first strand
Strand 2
A
375 378parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
252 253first strand
Strand 2
A
260 262anti-parallel
Strand 3
A
267 268anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il