Analysis of interatomic Contacts of Structural Units in PDB entry:
9JFV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9JFV entry

There are 4 chains in PDB entry 9JFV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 9	VAL 384
B	GLU 3	ASN 340
C	ALA 7	ARG 62
R	GLY 8	ALA 300

There are 24 helices in PDB entry 9JFV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	9	39	Right-handed alpha
Helix 2	AA2	A	52	61	Right-handed alpha
Helix 3	AA3	A	233	238	Right-handed 310
Helix 4	AA4	A	252	268	Right-handed alpha
Helix 5	AA5	A	283	294	Right-handed alpha
Helix 6	AA6	A	297	301	Right-handed 310
Helix 7	AA7	A	321	340	Right-handed alpha
Helix 8	AA8	A	360	381	Right-handed alpha
Helix 9	AA9	B	4	26	Right-handed alpha
Helix 10	AB1	B	29	34	Right-handed alpha
Helix 11	AB2	C	8	24	Right-handed alpha
Helix 12	AB3	C	29	44	Right-handed alpha
Helix 13	AB4	R	14	17	Right-handed 310
Helix 14	AB5	R	18	48	Right-handed alpha
Helix 15	AB6	R	51	80	Right-handed alpha
Helix 16	AB7	R	86	121	Right-handed alpha
Helix 17	AB8	R	130	150	Right-handed alpha
Helix 18	AB9	R	151	155	Right-handed 310
Helix 19	AC1	R	176	188	Right-handed alpha
Helix 20	AC2	R	190	210	Right-handed alpha
Helix 21	AC3	R	215	254	Right-handed alpha
Helix 22	AC4	R	257	275	Right-handed alpha
Helix 23	AC5	R	277	287	Right-handed alpha
Helix 24	AC6	R	290	300	Right-handed alpha

There are 8 sheets in PDB entry 9JFV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	212	214	first strand
Strand 2	A	217	222	anti-parallel
Strand 3	A	40	46	parallel
Strand 4	A	243	246	parallel
Strand 5	A	278	279	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	47	51	first strand
Strand 2	B	336	339	anti-parallel
Strand 3	B	327	330	anti-parallel
Strand 4	B	319	320	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	63	first strand
Strand 2	B	69	74	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	88	94	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	100	105	first strand
Strand 2	B	112	116	anti-parallel
Strand 3	B	120	125	anti-parallel
Strand 4	B	134	140	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	151	first strand
Strand 2	B	156	161	anti-parallel
Strand 3	B	165	170	anti-parallel
Strand 4	B	175	180	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	187	192	first strand
Strand 2	B	198	203	anti-parallel
Strand 3	B	208	212	anti-parallel
Strand 4	B	218	222	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	229	234	first strand
Strand 2	B	241	245	anti-parallel
Strand 3	B	250	254	anti-parallel
Strand 4	B	259	264	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	275	278	first strand
Strand 2	B	284	288	anti-parallel
Strand 3	B	294	298	anti-parallel
Strand 4	B	304	307	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9JFV

Analysis of interatomic Contacts of Structural Units in PDB entry:
9JFV