Analysis of interatomic Contacts of Structural Units in PDB entry:
9JG0

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9JG0 entry

There are 4 chains in PDB entry 9JG0 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
R	ILE 32	LEU 449
H	GLU 4	LYS 228
K	GLN 1	SER 120
L	ASP 2	ARG 213

There are 25 helices in PDB entry 9JG0. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	R	41	73	Right-handed alpha
Helix 2	AA2	R	78	98	Right-handed alpha
Helix 3	AA3	R	98	108	Right-handed alpha
Helix 4	AA4	R	114	149	Right-handed alpha
Helix 5	AA5	R	156	175	Right-handed alpha
Helix 6	AA6	R	175	181	Right-handed alpha
Helix 7	AA7	R	212	228	Right-handed alpha
Helix 8	AA8	R	228	270	Right-handed alpha
Helix 9	AA9	R	272	293	Right-handed alpha
Helix 10	AB1	R	311	332	Right-handed alpha
Helix 11	AB2	R	334	343	Right-handed alpha
Helix 12	AB3	R	343	352	Right-handed alpha
Helix 13	AB4	R	352	396	Right-handed alpha
Helix 14	AB5	R	400	411	Right-handed alpha
Helix 15	AB6	R	411	422	Right-handed alpha
Helix 16	AB7	R	425	433	Right-handed alpha
Helix 17	AB8	R	434	449	Right-handed alpha
Helix 18	AB9	H	90	94	Right-handed 310
Helix 19	AC1	H	107	112	Right-handed alpha
Helix 20	AC2	H	170	172	Right-handed 310
Helix 21	AC3	H	200	206	Right-handed alpha
Helix 22	AC4	K	87	91	Right-handed 310
Helix 23	AC5	L	80	84	Right-handed 310
Helix 24	AC6	L	123	128	Right-handed alpha
Helix 25	AC7	L	185	190	Right-handed alpha

There are 15 sheets in PDB entry 9JG0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	33	36	first strand
Strand 2	R	183	193	parallel
Strand 3	R	200	207	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	6	10	first strand
Strand 2	H	20	28	anti-parallel
Strand 3	H	81	87	anti-parallel
Strand 4	H	71	76	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	14	15	first strand
Strand 2	H	121	125	parallel
Strand 3	H	95	103	anti-parallel
Strand 4	H	35	42	anti-parallel
Strand 5	H	48	55	anti-parallel
Strand 6	H	60	63	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	14	15	first strand
Strand 2	H	121	125	parallel
Strand 3	H	95	103	anti-parallel
Strand 4	H	116	117	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	134	138	first strand
Strand 2	H	149	159	anti-parallel
Strand 3	H	190	199	anti-parallel
Strand 4	H	177	179	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	134	138	first strand
Strand 2	H	149	159	anti-parallel
Strand 3	H	190	199	anti-parallel
Strand 4	H	183	184	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	165	168	first strand
Strand 2	H	208	213	anti-parallel
Strand 3	H	222	225	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	3	7	first strand
Strand 2	K	16	25	anti-parallel
Strand 3	K	78	86	anti-parallel
Strand 4	K	68	73	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	10	11	first strand
Strand 2	K	115	118	parallel
Strand 3	K	92	99	anti-parallel
Strand 4	K	33	39	anti-parallel
Strand 5	K	46	51	anti-parallel
Strand 6	K	58	60	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	10	11	first strand
Strand 2	K	115	118	parallel
Strand 3	K	92	99	anti-parallel
Strand 4	K	108	110	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	5	6	first strand
Strand 2	L	20	26	anti-parallel
Strand 3	L	71	76	anti-parallel
Strand 4	L	63	68	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	11	14	first strand
Strand 2	L	104	108	parallel
Strand 3	L	86	94	anti-parallel
Strand 4	L	34	39	anti-parallel
Strand 5	L	46	50	anti-parallel
Strand 6	L	54	55	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	11	14	first strand
Strand 2	L	104	108	parallel
Strand 3	L	86	94	anti-parallel
Strand 4	L	97	99	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	116	120	first strand
Strand 2	L	131	141	anti-parallel
Strand 3	L	175	184	anti-parallel
Strand 4	L	161	165	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	147	152	first strand
Strand 2	L	193	199	anti-parallel
Strand 3	L	207	212	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9JG0

Analysis of interatomic Contacts of Structural Units in PDB entry:
9JG0