Analysis of interatomic Contacts of Structural Units in PDB entry:
9JG3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9JG3 entry

There are 5 chains in PDB entry 9JG3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1HIS 603
B
 A 1 A 190
C
 T 1 A 26
D
 T 1 T 10
E
 LYS 4LEU 108
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 9JG3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
11 65Right-handed alpha
Helix 2
AA2
A
66 79Right-handed alpha
Helix 3
AA3
A
86 96Right-handed alpha
Helix 4
AA4
A
97 101Right-handed 310
Helix 5
AA5
A
182 186Right-handed 310
Helix 6
AA6
A
192 197Right-handed 310
Helix 7
AA7
A
198 209Right-handed alpha
Helix 8
AA8
A
217 237Right-handed alpha
Helix 9
AA9
A
289 295Right-handed alpha
Helix 10
AB1
A
323 332Right-handed alpha
Helix 11
AB2
A
333 342Right-handed alpha
Helix 12
AB3
A
345 365Right-handed alpha
Helix 13
AB4
A
397 428Right-handed alpha
Helix 14
AB5
A
436 472Right-handed alpha
Helix 15
AB6
A
480 485Right-handed 310
Helix 16
AB7
A
511 517Right-handed alpha
Helix 17
AB8
A
519 535Right-handed alpha
Helix 18
AB9
A
581 593Right-handed alpha
Helix 19
AC1
E
12 19Right-handed alpha
Helix 20
AC2
E
33 50Right-handed alpha
Helix 21
AC3
E
66 71Right-handed alpha
Helix 22
AC4
E
96 108Right-handed alpha
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There are 7 sheets in PDB entry 9JG3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
257 260first strand
Strand 2
A
300 309anti-parallel
Strand 3
A
312 320anti-parallel
Strand 4
A
2 9anti-parallel
Strand 5
A
283 285anti-parallel
Strand 6
A
274 276anti-parallel
Strand 7
A
267 269anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
127 128first strand
Strand 2
E
75 76anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
130 131first strand
Strand 2
A
168 169anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
135 148first strand
Strand 2
A
151 161anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
392 393first strand
Strand 2
A
385 387anti-parallel
Strand 3
A
374 379anti-parallel
Strand 4
A
474 477parallel
Strand 5
A
537 539parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
564 565first strand
Strand 2
A
579 580anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
6 7first strand
Strand 2
E
55 60parallel
Strand 3
E
23 29parallel
Strand 4
E
78 83anti-parallel
Strand 5
E
86 92anti-parallel
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