Analysis of interatomic Contacts of Structural Units in PDB entry:
9JG5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9JG5 entry

There is 1 chain in PDB entry 9JG5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 45SER 600
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 31 helices in PDB entry 9JG5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
46 55Right-handed alpha
Helix 2
AA2
A
60 65Right-handed alpha
Helix 3
AA3
A
65 75Right-handed alpha
Helix 4
AA4
A
76 90Right-handed alpha
Helix 5
AA5
A
90 106Right-handed alpha
Helix 6
AA6
A
110 117Right-handed alpha
Helix 7
AA7
A
118 120Right-handed 310
Helix 8
AA8
A
121 151Right-handed alpha
Helix 9
AA9
A
157 161Right-handed 310
Helix 10
AB1
A
193 202Right-handed alpha
Helix 11
AB2
A
217 237Right-handed alpha
Helix 12
AB3
A
241 250Right-handed alpha
Helix 13
AB4
A
250 267Right-handed alpha
Helix 14
AB5
A
270 278Right-handed alpha
Helix 15
AB6
A
281 287Right-handed alpha
Helix 16
AB7
A
288 303Right-handed alpha
Helix 17
AB8
A
307 316Right-handed alpha
Helix 18
AB9
A
321 356Right-handed alpha
Helix 19
AC1
A
358 362Right-handed 310
Helix 20
AC2
A
368 381Right-handed alpha
Helix 21
AC3
A
383 418Right-handed alpha
Helix 22
AC4
A
425 447Right-handed alpha
Helix 23
AC5
A
450 461Right-handed alpha
Helix 24
AC6
A
465 481Right-handed alpha
Helix 25
AC7
A
484 497Right-handed alpha
Helix 26
AC8
A
501 510Right-handed alpha
Helix 27
AC9
A
510 526Right-handed alpha
Helix 28
AD1
A
539 555Right-handed alpha
Helix 29
AD2
A
555 568Right-handed alpha
Helix 30
AD3
A
571 581Right-handed alpha
Helix 31
AD4
A
594 600Right-handed alpha
Back to top of page

There is 1 sheet (AA1) in PDB entry 9JG5.

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
531 532first strand
Strand 2
A
536 537anti-parallel
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il